PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G021475_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 816aa    MW: 92002.2 Da    PI: 8.954
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G021475_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.32e-06133165941
                        HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
           Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLte 41 
                        +  ++ L+e+Fek++yp ++++e LA++lgLt 
  GRMZM2G021475_P01 133 PIVTQKLKEHFEKDPYPCHATKEGLAQELGLTF 165
                        556899*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-6123165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-5127167IPR009057Homeodomain-like
CDDcd000861.08E-5128167No hitNo description
PROSITE profilePS5133451.425163372IPR005512PRONE domain
PfamPF037595.1E-64168338IPR005512PRONE domain
PfamPF037592.3E-5339365IPR005512PRONE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043547Biological Processpositive regulation of GTPase activity
GO:0003677Molecular FunctionDNA binding
GO:0005089Molecular FunctionRho guanyl-nucleotide exchange factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MAEYMLVVQS NLNQCNNEDI PLSGTKIEME SYEQESSDSS DEEWSTLSTP RKTKLQGNEK  60
VSLTESVRSA KRCSRRAPAR EHNNEHTQSE QLHGSASEQQ AREQLHGSVS KQQTEVLRSN  120
VSSGDASKCH FGPIVTQKLK EHFEKDPYPC HATKEGLAQE LGLTFNQEIL ESLRDPEFWY  180
VEQGIAAPDC DGSASFRVAF HRRDEKWWLS VPRVPPGGLH NKTRKQLQHK RDCANQILKA  240
AMAINSNTLA EMEVPEPYLD SLPKNGRSTL GDIIYRYITS DQFSPECLLD CLDLSTEYQA  300
LEVANRVEAS VYVWRRRVAA KPVNGLGRSN SARSSWGMSY SRVLDSLASN IVTRIDDLLN  360
IDELNEHAEH FAAIGDVDCK IAVSQTAAVP SFPVPASSTP FMTAYTTPSF SPAQLASPLK  420
KEKTSLTPGR RSQHSRGAGT KKGLMDRVGT KIKGMMISNG MMINVSTTTE LSQKLELVPN  480
NGLWRQTWPL FIATPLDKRL SNIPIRCLGY VFKQSCSLGL KFHWLQEKIT DHKFHWLQDN  540
KNKGAASLHR ILCCYCPAPF KQFLEIVTNM KFDEEPNYAK LISLFDGLIE APASRQIRID  600
GALKVGQKCG RLVADLEEVE QPKKKVRLGS PAAQWISVYN ARWPMKQRYH YNVADSRLSQ  660
HIEKGNDDGL YKPLGTHHGR RNWFLFSGTP YTQQSYKVSE SFPYKWINKK WKEGFHVTSM  720
ATAGNRWGVV MSRNSGFSTQ VVELDFLYPN EGIHRRWESG YRITSTAATN NQAAFILSMP  780
KRKPMDETQE TLRTSAFPSS HVKISLPFAS PVTVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ntx_A9e-41177364136357Emb|CAB41934.1
2ntx_B9e-41177364136357Emb|CAB41934.1
2nty_A9e-41177364136357Emb|CAB41934.1
2nty_B9e-41177364136357Emb|CAB41934.1
2wbl_A9e-41177364136357RHO OF PLANTS GUANINE NUCLEOTIDE EXCHANGE FACTOR 8
2wbl_B9e-41177364136357RHO OF PLANTS GUANINE NUCLEOTIDE EXCHANGE FACTOR 8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.63220.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G021475
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G021475_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538670.0BT053867.1 Zea mays full-length cDNA clone ZM_BFb0341D15 mRNA, complete cds.
GenBankBT0674230.0BT067423.1 Zea mays full-length cDNA clone ZM_BFc0042J13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6D8000.0A0A3L6D800_MAIZE; Casein kinase 1-like protein HD16
STRINGGRMZM2G021475_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768