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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G021095_P01 |
Common Name | LOC100280810 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
LBD |
Protein Properties |
Length: 235aa MW: 25087.4 Da PI: 7.2827 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G021095_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 130.4 | 7.8e-41 | 61 | 160 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
+CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++lk+
GRMZM2G021095_P01 61 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANELKV 152
7******************************************************************************************* PP
DUF260 93 elallkee 100
+la++++
GRMZM2G021095_P01 153 QLARAQAD 160
***99875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MDDYGNASAG TAAPQPQQYY CRSVSPPSRV SSSCSPPPPP PPPAVLQVVG NVPPPTVVLS 60 PCAACKILRR RCADGCVLAP YFPPTEPAKF TTAHRVFGAS NIIKLLQDLP ESSRADAVSS 120 MVYEAEARLR DPVYGCAGAV CRLQKQANEL KVQLARAQAD LLNAQAKHAN LLALFCVEMA 180 NRRGNQQHPS PLTTMMDGGG GGGFGAAAYY QQTTLYDSDL DSATTWPDHE AQLWT
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU953937 | 0.0 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |