PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G020254_P03 | ||||||||
Common Name | ZEAMMB73_343636, Zm.32914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 249aa MW: 27557.2 Da PI: 8.4822 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.3 | 5.9e-32 | 160 | 215 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++ d++v ei+Y+geHnh GRMZM2G020254_P03 160 DGYSWRKYGQKKVKGSEFPRSYYKCTHPSCPVKRKVETTP-DGQVAEIVYSGEHNHL 215 9***************************************.***************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-26 | 153 | 217 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.55 | 153 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-24 | 158 | 216 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-33 | 158 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-25 | 160 | 214 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MACGAWALAW VFSVLEQSLS QTRMGSRRMG SEPDLSLNAD HPLLGSGKMQ PHEKVAVLKP 60 VASRPFSSFW PFPKFLHDFN ATCSPTITFP QETELIRPKA TRLASLPGDL PTQIAATTDA 120 GSDTMSEEVE GYAKHHTYRD HATACQAARR NGERSRLSLD GYSWRKYGQK KVKGSEFPRS 180 YYKCTHPSCP VKRKVETTPD GQVAEIVYSG EHNHLKPGKP CPPRKPLLST STDAVMCDTH 240 GIDDMTPPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-16 | 160 | 217 | 16 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G020254 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G020254_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU952197 | 0.0 | EU952197.1 Zea mays clone 1219862 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008662746.1 | 1e-152 | probable WRKY transcription factor 3 isoform X1 | ||||
TrEMBL | K7TH29 | 1e-151 | K7TH29_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G020254_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 | Representative plant | OGRP12627 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 3e-31 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G020254_P03 |