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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G018876_P01 |
Common Name | Orphan198, Zm.78343 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
DBB |
Protein Properties |
Length: 259aa MW: 27665.3 Da PI: 4.6429 |
Description |
DBB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G018876_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 21.2 | 5.9e-07 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
C+ +e + C ++ lC+ C +e+H H++ p
GRMZM2G018876_P01 4 QCDACEAAAAAVVCCADEAALCARCDVEIHAAnklaskHQRLP 46
6******99*********************6678888898877 PP
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2 | zf-B_box | 28.4 | 3.4e-09 | 57 | 88 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34
++C+ ++e ++ +fC +++ llC+dC + +H
GRMZM2G018876_P01 57 LPRCDVCQERPAFIFCVEDRALLCRDCDEPIH 88
689**************************999 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MRIQCDACEA AAAAVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLGDA AALPASLPRC 60 DVCQERPAFI FCVEDRALLC RDCDEPIHVP GTLSGNHQRY LATGIRVGFS SVCGASAEGL 120 PPAPPKGSSK PTAVVSAPAA GTTTKTRTVK DALPQEVPSS PFLPPSGWAV EDLLELSDYE 180 SSDKKDSSLG LKELEWFEDI DLFHAHSPAK TAMAEFFASP QPVSNAGFYK ANGARLFKKS 240 RMEVPDDDDE DYFIVPDLG
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers. |
Functional Description ? help
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Source |
Description |
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728300 | 0.0 | KJ728300.1 Zea mays clone pUT6580 orphans transcription factor (Orphan198) mRNA, partial cds. |
Publications
? help Back to Top |
- Gangappa SN,Holm M,Botto JF
Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Imtiaz M, et al.
Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis. Plant Mol. Biol., 2015. 89(1-2): p. 1-19 [PMID:26253592] - Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209]
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