PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G018414_P01 | ||||||||
Common Name | Zm.6771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRF | ||||||||
Protein Properties | Length: 430aa MW: 46808.4 Da PI: 9.3005 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.7 | 2.4e-24 | 160 | 204 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+ GRMZM2G018414_P01 160 DPEPGRCRRTDGKKWRCSKEAMPDHKYCERHINRNRHRSRKPVEN 204 79****************************************997 PP | |||||||
2 | QLQ | 58.1 | 2.7e-20 | 102 | 137 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll+ i+k GRMZM2G018414_P01 102 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLVSISK 137 9*******************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.5E-11 | 101 | 137 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.8E-14 | 102 | 135 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.702 | 102 | 137 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.471 | 160 | 204 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.9E-20 | 161 | 203 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0025541 | anatomy | bundle sheath cell | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MSAEFCAAAA GAVAMELGVG DVMGLQQGIA AATGPSSGDS DLGLLKRAGL AQAATSYPSP 60 FLDQQKMLRF SKAAAAHTSP SGLDFGGGPS EQAFLLSRTK RPFTPSQWME LEHQALIYKY 120 LNAKAPIPSS LLVSISKSFR SSNRVSWRPL YQGYANADSD PEPGRCRRTD GKKWRCSKEA 180 MPDHKYCERH INRNRHRSRK PVENQPRKAT KEVTTAAAGS LPCAGPQGSL KKAKVNDSKP 240 GTGSYWTDSL NRTMLSREKA NKPTDDESLL LSSTKNSQPT LSLLTQLKQQ NKPDKLGPTP 300 ENEPNSDTML KAWGGSHHKS ISSTQRHDAE SLQSVLQNFS LAQNDRLESE KNRYSDSVLV 360 SSAFYSADGP QTTCLTPNMT QVQQDCISSS WEMPQGGPLG EILTNSKISE DLSKCGSRSY 420 GWLLNLDHAP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.6771 | 0.0 | ear| meristem| silk| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G018414 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G018414_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085071 | 0.0 | BT085071.1 Zea mays full-length cDNA clone ZM_BFb0279J23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106044.1 | 0.0 | putative growth-regulating factor 13 | ||||
Swissprot | Q9FRG8 | 1e-179 | GRF9_ORYSJ; Growth-regulating factor 9 | ||||
TrEMBL | C4J2M4 | 0.0 | C4J2M4_MAIZE; Growth-regulating factor 2 | ||||
STRING | GRMZM2G018414_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13124 | 25 | 29 |
Representative plant | OGRP13933 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 6e-50 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G018414_P01 |
Publications ? help Back to Top | |||
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