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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G018138_P01 | ||||||||
Common Name | LOC103634250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 22964.5 Da PI: 10.4159 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.6e-19 | 23 | 73 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d +r r +lg+f+ta+eAa+a+++a+++l+ge GRMZM2G018138_P01 23 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTADEAARAYDEAARALRGE 73 589******.7*********....4456**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-14 | 23 | 73 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.205 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-32 | 23 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-27 | 23 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-27 | 23 | 81 | No hit | No description |
PRINTS | PR00367 | 7.3E-8 | 24 | 35 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-19 | 24 | 81 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.3E-8 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MATTQDSGRT ASATALTTSR GRRFVGVRQR PSGRWVAEIK DSAQRVRLWL GTFDTADEAA 60 RAYDEAARAL RGENTRTNFA DRARHGGPAG AGSGAARARL SKNLQHVMAR AAAAGRATAC 120 AGVGDQFALA AVFRHPVAAQ QQVKHAVQPS FVVPRRTEAP PLSSVPAGGG EVWRVDDVDT 180 ADESLCAAEE RSFKVSSSVI VPPSFSASSS ESFGLDDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 23 | 79 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G018138 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G018138_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008654042.1 | 1e-154 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A1D6I938 | 1e-153 | A0A1D6I938_MAIZE; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | GRMZM2G018138_P01 | 1e-154 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-18 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G018138_P01 |
Entrez Gene | 103634250 |