PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G017923_P01 | ||||||||
Common Name | AY110182 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 499aa MW: 55284.6 Da PI: 5.069 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 8e-06 | 150 | 172 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ff++ C++G++C+ +Hg GRMZM2G017923_P01 150 MSICKFFLQ-QRCRFGSNCRMSHG 172 579******.*********98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.9E-5 | 147 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-5 | 148 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00443 | 1.9E-14 | 302 | 348 | IPR000467 | G-patch domain |
PROSITE profile | PS50174 | 13.331 | 304 | 363 | IPR000467 | G-patch domain |
Pfam | PF01585 | 8.2E-13 | 304 | 346 | IPR000467 | G-patch domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MAGEGEDEAA AIERQLEQQL QEQRSSLAAV DEALAADPSN ADLLEVHEEL LAAIKDAEEG 60 LLHLKRSRLL KQVDEIFPDK ESISQSPEVA IESLDPDDVE PEPLESHDFS VGSKCRFRHN 120 NGRWYNGCII GFEGSGDARI SFLTPTSENM SICKFFLQQR CRFGSNCRMS HGIVMPSKAL 180 KRFTPTRWEQ SLVGSSILAT SGYNSGLWRR AELESWDDNL KIGQVVFQDD GSSASLPSDS 240 LSVSEYADMS DEDEGSLSDE ESEFSDDADQ EDGSVHQGLG LLEFTNFSGI QTDTMIFAKW 300 EHHTRGVASK MMAKMGYREG MGLGVSGQGM LDPIPVKVLP PKQSLDHALA SSEADGGSGK 360 KRSRGGKRKR EKKFAEQARA AKAEEAERSV FNFINSHLVS QEGSTTKVRK GSSVETNGLA 420 KKEDRRSLVA YGEEVKELRI RVEKLEEMKN RNCKDKAFFE AASRKLEETR KALADAEATH 480 ASATSAVTRK EKEKKWLKF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 358 | 364 | GKKRSRG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26355 | 0.0 | ear| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G017923 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G017923_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034268 | 0.0 | BT034268.1 Zea mays full-length cDNA clone ZM_BFc0007I14 mRNA, complete cds. | |||
GenBank | BT064031 | 0.0 | BT064031.1 Zea mays full-length cDNA clone ZM_BFc0132O21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130891.1 | 0.0 | uncharacterized protein LOC100191995 | ||||
Swissprot | Q6K687 | 0.0 | C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18 | ||||
TrEMBL | B4FAY0 | 0.0 | B4FAY0_MAIZE; Zinc finger CCCH domain-containing protein 22 | ||||
STRING | GRMZM2G017923_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5570 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24830.1 | 1e-137 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G017923_P01 |
Entrez Gene | 100191995 |
Publications ? help Back to Top | |||
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