PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G017606_P01
Common NameLOC100284538, ZEAMMB73_351068
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SRS
Protein Properties Length: 296aa    MW: 30643.7 Da    PI: 8.0766
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G017606_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702216.75.1e-67922363153
             DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklss 93 
                        +gt+sCqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaakrrerqqq+a+ +        ++ skr+r+  + ++ s++++t++ss
  GRMZM2G017606_P01  92 AGTISCQDCGNQAKKDCVHMRCRTCCKSRGFDCPTHVKSTWVPAAKRRERQQQQATGA--------AEPSKRHRDAaTGAQPSSTTATTTSS 175
                        6899***********************************************9999874........45566666652334556666677777 PP

             DUF702  94 aeskke.letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                        +e++++ + ++++P+evssea+frcvr++ vd+ ++e+aYqt+vsi+GhvfkGiL+d G+e
  GRMZM2G017606_P01 176 GEQQQMaVVAERFPREVSSEALFRCVRLGPVDEPDAEVAYQTSVSIAGHVFKGILHDVGPE 236
                        766655156677***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-6194236IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.0E-2896138IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-21187235IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAGFPLGGGG HGRGDHHHPH VNPSSGSGSD SAAAAYLYTA AAAPRGGFQL WPPHPAQEHH  60
HHFYAPNIIR FADDPAAGSS RGGRGSASGA GAGTISCQDC GNQAKKDCVH MRCRTCCKSR  120
GFDCPTHVKS TWVPAAKRRE RQQQQATGAA EPSKRHRDAA TGAQPSSTTA TTTSSGEQQQ  180
MAVVAERFPR EVSSEALFRC VRLGPVDEPD AEVAYQTSVS IAGHVFKGIL HDVGPEPSTV  240
AAGGGFRHAT EGSSPSTAAA GEGSVVGPVS SSAVVMDPYP TPGPYGAAHF FHGHPR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.299710.0meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G017606
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G017606_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687730.0EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357585.10.0SHI
TrEMBLA0A3L6EXT10.0A0A3L6EXT1_MAIZE; Protein SHORT INTERNODES
TrEMBLB6TUV80.0B6TUV8_MAIZE; SHI
STRINGGRMZM2G017606_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-41Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]