PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G015666_P01 | ||||||||
Common Name | bHLH33, Zm.20566 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 35306.8 Da PI: 7.1112 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.4e-13 | 120 | 171 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ h ++Er+RR+++N+ ++ Lr+l+P+a + ++ + a+i+ A++++k+L+ GRMZM2G015666_P01 120 QRMIHIAVERNRRKQMNEHLAALRSLMPPA---HTQRGDQASIVGGAINFVKELE 171 6999**************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.54E-14 | 118 | 175 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-13 | 118 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-17 | 119 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.205 | 119 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-11 | 120 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 125 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MALEAVVLSQ SQFQQGSRFG CGAMAAGGAW SDLLFSGTEG LFEMGGAAGR GWNAAASSPP 60 QLLQELGDNG AAGSLPVASA GSASGGAGQD APAMAAAAAS GRRKRRRMRP VKNEEEVESQ 120 RMIHIAVERN RRKQMNEHLA ALRSLMPPAH TQRGDQASIV GGAINFVKEL EQLLQSLEAR 180 RRSPQCAAYA VDPDDAGPFA DFLTFPQYSM CAVIAAPENT GHHREGGAVA EQEASGSKPS 240 AVADVEATMV ESHANLRVLS RRRPRQLLRL VLGLQGHRLT VLHLNMSSGA HMVLYSFSLK 300 VEDDCQLTSV GEIAAAAHHI VEKINEEQNK AAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 106 | RKRRR |
2 | 120 | 131 | RMIHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.20566 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G015666 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G015666_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972204 | 0.0 | EU972204.1 Zea mays clone 377384 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151793.1 | 0.0 | uncharacterized protein LOC100285428 | ||||
TrEMBL | B6U4N9 | 0.0 | B6U4N9_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G015666_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Representative plant | OGRP253 | 15 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 8e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G015666_P01 |
Entrez Gene | 100285428 |
Publications ? help Back to Top | |||
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