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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G013688_P01 |
Common Name | bHLH109 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
bHLH |
Protein Properties |
Length: 290aa MW: 30921.8 Da PI: 5.3978 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G013688_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 36.5 | 8.6e-12 | 120 | 165 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e Er+RR+++N +f Lr +P+ +++Ka+ L A YI +L
GRMZM2G013688_P01 120 SHVESERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAASYIAEL 165
899***********************6.....49**************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MDDLLSPCSS FSPPSPPSFF SHAVHPVIEF ASCEVPEQWL LDDLVVAKNE GYDDVDDLWP 60 VRSSLSPDSE VSEQPLPPQP PPPSQQELTS VRAAPAQQQQ RLGKRRGRKP GPRPDGPAVS 120 HVESERQRRE KLNRRFCDLR AAVPTVSRMD KASLLADAAS YIAELRGRVA RLEADSRRAA 180 ASRWDPAVAA AASASTATIG LAGAGGGADE AVEVRMLGPD AAAVRATSAG PHAPARLMGA 240 LRSLELHVQH ACVTRVNGVT VLDVVVDVAT PLQDDDGGLR ATLLQMMQDS
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 7e-17 | 119 | 175 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 7e-17 | 119 | 175 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 7e-17 | 119 | 175 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 7e-17 | 119 | 175 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 7e-17 | 119 | 175 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 7e-17 | 119 | 175 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 7e-17 | 119 | 175 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 7e-17 | 119 | 175 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727012 | 0.0 | KJ727012.1 Zea mays clone pUT3993 bHLH transcription factor (bHLH109) gene, partial cds. |