PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G013612_P01 | ||||||||
Common Name | LOC103646635, Zm.132482 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARR-B | ||||||||
Protein Properties | Length: 392aa MW: 44074.6 Da PI: 6.8479 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47 | 5.7e-15 | 166 | 216 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 l Wtp L ++F++ave L G+ A Pk+i lm+v++++++++ HLQk+R GRMZM2G013612_P01 166 HLMWTPFLQRKFLQAVELL-GE-DASPKKIQLLMNVNSVSRKQISAHLQKHRK 216 689****************.55.5***************************96 PP | |||||||
2 | Response_reg | 38.4 | 6.8e-14 | 17 | 123 | 2 | 107 |
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 ++vd++ +++ +l + ++ +v + +++ +al+ lk+++ D l+ ++m +m+G+++l r+ +++l++i+++a + +++++ ++ GRMZM2G013612_P01 17 IVVDENLCHARAASCMLANLQC-KVIVYASPVDALKFLKDHQrdTDFALVEVNMKEMHGFQFLDMSRKLHKSLQVIMMSADTTWPTMKRSVE 107 578888888899999999****.9**************988888************************************************ PP TTESEEEESS--HHHH CS Response_reg 92 aGakdflsKpfdpeel 107 +Ga+ + Kp d + + GRMZM2G013612_P01 108 LGARFLIKKPLDANTM 123 **********998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 8.54E-20 | 13 | 131 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.3E-4 | 14 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 22.217 | 15 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 3.3E-19 | 15 | 138 | No hit | No description |
CDD | cd00156 | 2.79E-11 | 17 | 121 | No hit | No description |
Pfam | PF00072 | 5.0E-13 | 17 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-15 | 162 | 220 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-10 | 163 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-15 | 167 | 217 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGTQIVREQT SGSLTAIVVD ENLCHARAAS CMLANLQCKV IVYASPVDAL KFLKDHQRDT 60 DFALVEVNMK EMHGFQFLDM SRKLHKSLQV IMMSADTTWP TMKRSVELGA RFLIKKPLDA 120 NTMNNLWQHL DLKFQRTDKI KALFPGIEGK TGNAFEEGTN KQKGTHLMWT PFLQRKFLQA 180 VELLGEDASP KKIQLLMNVN SVSRKQISAH LQKHRKKVEK ELRNSNANNS SHGIGGASNS 240 RPSRIFEISH GRFQYNRPDV QPEHRSDESV SVEQTETIEE TQSNRLYEAM RRALQLGSVF 300 EEPQLPNDPP AGKDAREVEE VEMTMRDGNY RDAGTDAFGD KNEASGTHSS DGNNAKVKSK 360 DDSADKLVSC HDELRPVVTL VTYSDSEDGE TL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G013612 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G013612_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU943754 | 0.0 | EU943754.1 Zea mays clone 1685039 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008669569.1 | 0.0 | two-component response regulator ORR29 isoform X1 | ||||
TrEMBL | A0A1D6EDG3 | 0.0 | A0A1D6EDG3_MAIZE; OSJNBa0020I02.16-like protein | ||||
STRING | GRMZM2G013612_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5920 | 23 | 45 |
Representative plant | OGRP11178 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 7e-20 | response regulator 10 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G013612_P01 |
Entrez Gene | 103646635 |