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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G012717_P01 |
Common Name | COL10, Zm.35863 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
CO-like |
Protein Properties |
Length: 452aa MW: 48379.9 Da PI: 5.071 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G012717_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 24.3 | 6.7e-08 | 21 | 62 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
+r C+ + + +++++C ++ +lC+ C ++ H+ H+
GRMZM2G012717_P01 21 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 62
578*****************************6567777776 PP
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2 | CCT | 67.7 | 3.1e-23 | 397 | 440 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
GRMZM2G012717_P01 397 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 440
9*****************************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MIATTRGSSA KAAAAVGGKA ARACDGCLRR RARWYCAADD AFLCQGCDTS VHSANPLARR 60 HERLRLCPAS PLQTPPDRSA AAAATATNKR ERHDEVAVPA WFGRKARTPR GGHAKSVGQV 120 ALSRRLVVPH AAGGDSDSPD ERNGGEEEQL LYRVPILDPA LAEFCSPPPL EDAAGLALDA 180 SVCNEDGAIE DPAKPDPAAP LAQFCPVSGH FNFGPTDAEL REFAADMEAL LGHGLDDGNE 240 EDSSFYMETL GLLDPMEVGD DATQVKVETD GSSACCEASG TLACGLELDL EASDEMLDID 300 FDYASPQDTA TDERAASSDT GADAQFLQTS LSLTLNYEAI IQSWGSSPWT GGGERPHVKL 360 DTRWPHDYTN MWVVGGVVGH GGEDLPGTPR LGMDGGREAR VSRYREKRRT RLFSKKIRYE 420 VRKLNAEKRP RMKGRFVKRA TAGGSLAIAG LA
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 407 | 423 | RRTRLFSKKIRYEVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT063806 | 0.0 | BT063806.1 Zea mays full-length cDNA clone ZM_BFc0109I10 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 9e-73 | B-box type zinc finger protein with CCT domain |