PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G011588_P03 | ||||||||
Common Name | LOC100281572, Zm.7696 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 651aa MW: 71815.7 Da PI: 5.9727 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.3 | 1.3e-08 | 402 | 439 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ L++++gLt +q+++WF N R + GRMZM2G011588_P03 402 FEHflHPYPKDSEKLMLSRQTGLTRSQISNWFINARVR 439 664559******************************88 PP | |||||||
2 | BELL | 121.4 | 3.9e-39 | 265 | 336 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k akL+++l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi GRMZM2G011588_P03 265 EKQELQNKMAKLMTMLDEVDRKYKHYYHQMQLVMSSFNMVAGAGAAKPYTAVALQTISRHFRCLKDAINDQI 336 689*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.6E-57 | 189 | 334 | IPR006563 | POX domain |
Pfam | PF07526 | 7.4E-50 | 195 | 332 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 380 | 443 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 382 | 452 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.8E-9 | 383 | 447 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.41E-12 | 383 | 444 | No hit | No description |
SuperFamily | SSF46689 | 1.03E-16 | 384 | 449 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-17 | 400 | 439 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MATYYSSPGS ERDSQTMYSA ESGNVSYPVP SALGNFLYTN NASSGPYTEF SGIVQPQQNF 60 MELTGHPSAM SHDSSSNEAT NMGSSLTEQR SFGPLKDMRN EMLMHLMDGA HSSGSDLIHN 120 DAHSTVQLEF GMLNNHNSTS VPLAPGQGLS LSLNTHILAP SYPHWSAKQD LLTPNSYQGD 180 DNRMKNMQSE ASQAIRNSKY LKAAQELLDE IVSVWKCVKQ KTDKGPAEAG KADGKETDGG 240 IKSEGVSSNP QESGANAAAE LSTAEKQELQ NKMAKLMTML DEVDRKYKHY YHQMQLVMSS 300 FNMVAGAGAA KPYTAVALQT ISRHFRCLKD AINDQISVIR KKLGEDDNTS GKEGKLTRLR 360 YIDQQIRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLHPYP KDSEKLMLSR 420 QTGLTRSQIS NWFINARVRL WKPMIEDMYK EEIGEAELDS NSSSDNGQRN KDKAPSPEEN 480 EDLQTPTSQA CQTSQLGQSK AIVGGVMGFS GVLAGGFHTE ANPDDSFMSL MLKAQRPGET 540 EGTGLLHDAV AHHSDDGARF MAYHLAEFGR YGNSSNVSLT LGLQHAENSL AVPPNTQPGF 600 PGVRDQDMYN ATAPPLNVAS TSSEYDSASQ IDQQQQRQRF EPSPLMHDFV A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 8e-16 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 8e-16 | 389 | 446 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.7696 | 0.0 | embryo| glume| pericarp| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G011588 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G011588_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957139 | 0.0 | EU957139.1 Zea mays clone 1583941 BEL1-related homeotic protein 30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147963.2 | 0.0 | BEL1-related homeotic protein 30 | ||||
Refseq | XP_008675002.1 | 0.0 | BEL1-related homeotic protein 30 isoform X1 | ||||
Refseq | XP_008675010.1 | 0.0 | BEL1-related homeotic protein 30 isoform X1 | ||||
Refseq | XP_008675015.1 | 0.0 | BEL1-related homeotic protein 30 isoform X1 | ||||
Refseq | XP_020406839.1 | 0.0 | BEL1-related homeotic protein 30 isoform X1 | ||||
TrEMBL | A0A096PXB1 | 0.0 | A0A096PXB1_MAIZE; BEL1-like homeodomain protein 3 | ||||
STRING | GRMZM2G011588_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-115 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G011588_P03 |
Entrez Gene | 100281572 |
Publications ? help Back to Top | |||
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