PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G011385_P01 | ||||||||
Common Name | LOC103644151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 17625.7 Da PI: 7.7553 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.9 | 5.2e-36 | 21 | 121 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk +rrkC ++C+lapyfpa++p+++a+v+++FGasn+ ++l++lp +er +a+++++ eA+ r++dPvyG++gv+ +lq +++ ++ GRMZM2G011385_P01 21 RCAACKNQRRKCGQGCALAPYFPASDPQRYACVQRVFGASNIARMLQNLPVHERARAADTMAVEARRRVQDPVYGCAGVVGHLQGEIRATQC 112 6******************************************************************************************* PP DUF260 93 elallkeel 101 ela++++++ GRMZM2G011385_P01 113 ELARTQAQI 121 ****99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.857 | 20 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-35 | 21 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MSTGANTEAA ASSSPSPGNK RCAACKNQRR KCGQGCALAP YFPASDPQRY ACVQRVFGAS 60 NIARMLQNLP VHERARAADT MAVEARRRVQ DPVYGCAGVV GHLQGEIRAT QCELARTQAQ 120 IAVHAAVARA HPAPGPLQQQ EEEEEDDDAR EPFQGLDAYA LVPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-31 | 10 | 125 | 1 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-31 | 10 | 125 | 1 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G011385 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G011385_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665568.1 | 1e-116 | LOB domain-containing protein 24 | ||||
Swissprot | P59467 | 6e-39 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 5e-39 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A1D6L713 | 1e-115 | A0A1D6L713_MAIZE; LOB domain-containing protein 23 | ||||
STRING | GRMZM2G011385_P01 | 1e-116 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 9e-38 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G011385_P01 |
Entrez Gene | 103644151 |