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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G010669_P01 |
| Common Name | ZEAMMB73_964336 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 270aa MW: 30413.6 Da PI: 8.5857 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G010669_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 94.6 | 4.4e-30 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
GRMZM2G010669_P01 9 KRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 58
79***********************************************8 PP
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| 2 | K-box | 90.3 | 3.4e-30 | 80 | 160 | 6 | 85 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85
g le++ ++ +qqe+akL+++i++Lq+++Rhl+G+++++LslkeL+qLe++Lek+++kiR++K+ell ++i+++ +ke+
GRMZM2G010669_P01 80 GPPlLEHNAQQFYQQESAKLRNQIQMLQNTNRHLVGDSVGNLSLKELKQLESRLEKGISKIRARKSELLAAEINYMGQKEN 160
4556788899*******************************************************************9997 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.417 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.6E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.84E-45 | 2 | 78 | No hit | No description |
| SuperFamily | SSF55455 | 3.27E-32 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.9E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.9E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.9E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 2.6E-22 | 85 | 161 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 12.916 | 89 | 184 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 270 aa
Download sequence Send
to blast |
MGRGRIEIKR IENNTSRQVT FCKRRNGLLK KAYELSVLCD AEVALVVFSS RGRLYEYANN 60
SVKATIERYK KAHAVGSSSG PPLLEHNAQQ FYQQESAKLR NQIQMLQNTN RHLVGDSVGN 120
LSLKELKQLE SRLEKGISKI RARKSELLAA EINYMGQKEN LSFQMDTWNL QTRYGIAIEE 180
GEQQLQQVTV AQSVAAAAAT DVELNPFLEM DTKCFFPGGP FATLDMKCFF PGSLQMLEAQ 240
QRQMLATELN LGYQLAPPDT DVANNNPQQF
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-19 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Zm.10145 | 0.0 | aerial organ| ear| embryo| endosperm| glume| meristem| pericarp| shoot |
| Zm.96315 | 0.0 | ear| embryo| endosperm| ovary| pedicel| pericarp| tassel |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development. First detected in the ovule primordia and later in the inner and outer integuments, nucellus tissue and the inner layer of the carpel wall. {ECO:0000269|PubMed:10528264}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT036526 | 0.0 | BT036526.1 Zea mays full-length cDNA clone ZM_BFb0120G12 mRNA, complete cds. |
| GenBank | BT039074 | 0.0 | BT039074.1 Zea mays full-length cDNA clone ZM_BFb0368I18 mRNA, complete cds. |
| Publications
? help Back to Top |
- Gindullis F,Rose A,Patel S,Meier I
Four signature motifs define the first class of structurally related large coiled-coil proteins in plants.
BMC Genomics, 2002. 3: p. 9
[PMID:11972898] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yamaki S,Satoh H,Nagato Y
Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice.
Planta, 2005. 222(3): p. 408-17
[PMID:16001259] - Dreni L, et al.
The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
Plant J., 2007. 52(4): p. 690-9
[PMID:17877710] - Yamaki S,Nagato Y,Kurata N,Nonomura K
Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice.
Dev. Biol., 2011. 351(1): p. 208-16
[PMID:21146515] - Li H,Liang W,Yin C,Zhu L,Zhang D
Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.
Plant Physiol., 2011. 156(1): p. 263-74
[PMID:21444646] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Plant Cell, 2011. 23(7): p. 2536-52
[PMID:21784949]
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