PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Dof

Protein Properties

Length: 420aa MW: 42100.6 Da PI: 8.5504

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G010290_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.7e-38	105	166	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lr vPvGgg+rknk+sss GRMZM2G010290_P01 105 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRSVPVGGGSRKNKRSSS 166 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	101	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-33	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	109	163	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MAFLLSPRLT TPCIKRTTML SQGDVLQTCS AAAVLKHTAQ PYKSTSSKGV FCAVSLGLVK 60 PLEEMLMAAS AGAANPSQGS NPNPPPLAAP LTDAGSTERR ARPQKEKALN CPRCNSTNTK 120 FCYYNNYSLQ QPRYFCKTCR RYWTEGGSLR SVPVGGGSRK NKRSSSSSSS SSSSAAAASA 180 STSSSATSSS MASTPGAASK SPELAHEGAH DDLNLAFPHH GGLHAAEFAA FPSLESSNDM 240 CDQGGGMTSN GRGGGAGPAV GALSATELLR SSGCYMPLQM PGGDYTAAGF ALGEFRTPLL 300 PPPSSQSPLG FSLDAHGPGS SGAAAAAGYG SSAGLPQGVP GNAGRLLFPF EDLKPPVSPG 360 GGGVGGGGAS ATGGAGDGNS SHDQFDHNKE RGGGGGRGAG AGHDTPGFWS SMIGGSGASW

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MAFLLSPRLT TPCIKRTTML SQGDVLQTCS AAAVLKHTAQ PYKSTSSKGV FCAVSLGLVK  60
PLEEMLMAAS AGAANPSQGS NPNPPPLAAP LTDAGSTERR ARPQKEKALN CPRCNSTNTK  120
FCYYNNYSLQ QPRYFCKTCR RYWTEGGSLR SVPVGGGSRK NKRSSSSSSS SSSSAAAASA  180
STSSSATSSS MASTPGAASK SPELAHEGAH DDLNLAFPHH GGLHAAEFAA FPSLESSNDM  240
CDQGGGMTSN GRGGGAGPAV GALSATELLR SSGCYMPLQM PGGDYTAAGF ALGEFRTPLL  300
PPPSSQSPLG FSLDAHGPGS SGAAAAAGYG SSAGLPQGVP GNAGRLLFPF EDLKPPVSPG  360
GGGVGGGGAS ATGGAGDGNS SHDQFDHNKE RGGGGGRGAG AGHDTPGFWS SMIGGSGASW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.85932	0.0	ear\| ovary\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G010290

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at low level in germinating seeds 3 to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G010290_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727765	0.0	KJ727765.1 Zea mays clone pUT5711 C2C2-DOF transcription factor (DOF23) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001352097.1	0.0	dof zinc finger protein
Swissprot	Q9SXG8	1e-109	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	K7TVP9	0.0	K7TVP9_MAIZE; C2C2-DOF transcription factor (Fragment)
STRING	GRMZM2G010290_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G010290_P01

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]