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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GRMZM2G009598_P01 |
| Common Name | LOC100282192 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
ERF |
| Protein Properties |
Length: 238aa MW: 25624.3 Da PI: 11.4295 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G009598_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 60.9 | 3e-19 | 79 | 128 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+++GVr+++ +grW+AeIr+p + r+r +lg+f+taeeAa a++aa +++g
GRMZM2G009598_P01 79 RFRGVRRRP-WGRWAAEIREPHN---RRRLWLGTFDTAEEAANAYDAANIRFRG 128
69*******.**********732...5*********************998886 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MGTNPHLQEL AASAVAASEP PPRARVVRIL VHDADATDSS SSEDEAPPLL PRRRSRGGSS 60
SLSVRRRVME PAGASSAVRF RGVRRRPWGR WAAEIREPHN RRRLWLGTFD TAEEAANAYD 120
AANIRFRGVS ATTNFPAARY SPPPKPAKPI ISLTPEPGKV ITLPPVPVKP TFPVQVKEVG 180
GSWGGLVKGA RSEVKAFAPK PVWKMIPRVH QKFPGCADGS GLRAVHAASI YVEEVGGG
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Zm.84759 | 0.0 | aerial organ| endosperm| meristem| shoot| tassel |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT060929 | 0.0 | BT060929.1 Zea mays full-length cDNA clone ZM_BFb0072L15 mRNA, complete cds. |
| Publications
? help Back to Top |
- Alexandrov NN, et al.
Insights into corn genes derived from large-scale cDNA sequencing.
Plant Mol. Biol., 2009. 69(1-2): p. 179-94
[PMID:18937034] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zwack PJ,Compton MA,Adams CI,Rashotte AM
Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
Plant Cell Rep., 2016. 35(3): p. 573-84
[PMID:26650835] - Raines T, et al.
The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
Plant J., 2016. 85(1): p. 134-47
[PMID:26662515]
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