PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G006752_P02
Common NameLOC100216639
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family EIL
Protein Properties Length: 609aa    MW: 68145.6 Da    PI: 6.304
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G006752_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3416.62.7e-127384141351
                        XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 
                        e+l +rmwkd+++l+r+ker+ +l   ++a++++ + + +++qa rkkmsra DgiLkYMlk m+vcna+GfvYgiip+kgkpv+gasd++r
  GRMZM2G006752_P02  38 EDLARRMWKDRVRLRRIKERQHKLA-LQQAELQKLRPKPISDQAMRKKMSRAHDGILKYMLKLMQVCNARGFVYGIIPDKGKPVSGASDNIR 128
                        89*******************9865.666679999********************************************************* PP

                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHH CS
               EIN3  93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgel 184
                        aWWkekv+fd+ngpaai ky+++nl+++ ++s    +++++hsl++lqD+tlgSLLs+lmqhcdppqr++plekg +pPWWP+Gke+ww +l
  GRMZM2G006752_P02 129 AWWKEKVKFDKNGPAAIEKYESDNLVSATAQSG---GTKSQHSLMDLQDATLGSLLSSLMQHCDPPQRKYPLEKGASPPWWPSGKEEWWTAL 217
                        **************************9988888...88****************************************************** PP

                        T--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.XX....XXXXXX CS
               EIN3 185 glskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.ss....slrkqs 271
                        gl+  q  ppykkphdlkk+wk +vLt vikhmsp++++ir+++r+sk+lqdkm+akes ++l vl++ee++++++    s+    s+ +++
  GRMZM2G006752_P02 218 GLPSGQV-PPYKKPHDLKKVWKAGVLTGVIKHMSPNFDKIRNHVRKSKCLQDKMTAKESLIWLGVLQREESLVHRIDNGvSEitqrSMPEER 308
                        ****999.9******************************************************************99996445555777799 PP

                        XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX...............................XXXXXXXXXXXXXXXXXXXXX......XXX CS
               EIN3 272 pkvtlsceqkedvegkkeskikhvqavktta...............................gfpvvrkrkkkpsesakvsskevsrtcqss 332
                         + t s+++++dv g ++  +++++++++++                               +++   krk+ +++s+ ++        +  
  GRMZM2G006752_P02 309 IADTNSSSNEYDVYGFEDAPVSTSSKDDEQDlspvaqsavehvpkrgreraynkrpnqivpgKAKEPPKRKRTRHSSTVTEPDA----HRVV 396
                        99999*********9999998999999999999999**9999999999999999997777766666666665555555444432....2333 PP

                        XXXX.XXXXXXXXXXXXXX CS
               EIN3 333 qfrgsetelifadknsisq 351
                          + +++++ ++d+n+++q
  GRMZM2G006752_P02 397 DAP-ENSRNLIPDMNRLDQ 414
                        333.356677777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.5E-12338286No hitNo description
Gene3DG3DSA:1.10.3180.103.9E-69161293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.16E-59166289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MDQLALLATE LGDSSDFEVE GIQNLTENDV SDEEIEPEDL ARRMWKDRVR LRRIKERQHK  60
LALQQAELQK LRPKPISDQA MRKKMSRAHD GILKYMLKLM QVCNARGFVY GIIPDKGKPV  120
SGASDNIRAW WKEKVKFDKN GPAAIEKYES DNLVSATAQS GGTKSQHSLM DLQDATLGSL  180
LSSLMQHCDP PQRKYPLEKG ASPPWWPSGK EEWWTALGLP SGQVPPYKKP HDLKKVWKAG  240
VLTGVIKHMS PNFDKIRNHV RKSKCLQDKM TAKESLIWLG VLQREESLVH RIDNGVSEIT  300
QRSMPEERIA DTNSSSNEYD VYGFEDAPVS TSSKDDEQDL SPVAQSAVEH VPKRGRERAY  360
NKRPNQIVPG KAKEPPKRKR TRHSSTVTEP DAHRVVDAPE NSRNLIPDMN RLDQVEIPGT  420
SNQIVTFDHG GTTTEALQHR GDAQVQVHPP GAEVNSFYSA PTANPTPISI YMGDQPIPYQ  480
NNDSTRPRSE NSFPVDAHTG LNNLPSSYQN LPPKQSLPLP MMDHHVVPMG IRAPTDSIPY  540
GDHILGGGNS TSVPGDMQQL IDFPFYAEQD KFVGSSFEGL PLDYISISSP IPDIDDLLHD  600
DDLMEYLGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-631662919134ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.302200.0endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G006752
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00649PBMTransfer from LOC_Os09g31400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G006752_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0626360.0BT062636.1 Zea mays full-length cDNA clone ZM_BFb0325I05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346402.10.0uncharacterized protein LOC100216639
RefseqXP_023156230.10.0uncharacterized protein LOC100216639 isoform X1
SwissprotO231161e-141EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A3L6DZH70.0A0A3L6DZH7_MAIZE; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLC0P2W70.0C0P2W7_MAIZE; EIL transcription factor
STRINGGRMZM2G006752_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37203779
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-141ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]