PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

ERF

Protein Properties

Length: 254aa MW: 26432.5 Da PI: 4.7323

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G005301_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.3	3.9e-18	53	100	1	52
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 s y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ GRMZM2G005301_P01 53 SSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 100 67***998.******843...6*******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.8E-12	53	100	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-21	53	112	IPR016177	DNA-binding domain
CDD	cd00018	1.42E-19	53	112	No hit	No description
SMART	SM00380	3.0E-34	54	117	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.037	54	111	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.9E-31	54	113	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-10	55	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-10	77	93	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MPEGDQVSSS SSRSSQASSG GTSSSPPWSP AGKKAGAAEK RARARETTTD PPSSYRGVRM 60 RAWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDAAALV VKGPAAVLNF PDMAAALPRP 120 ASASPRDVQA AAARAAAMEM EPAAALHEPP DGPADEAAAL QMQPAAAAPP AGGQQQDEEL 180 EAIVELPRLD EDCAVATLGA TPCLSSSFHD VLAPAPWWVD DAAGYVAAAH DVDLFGLDGD 240 HGWAQSVGAL LWNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-16	54	111	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G005301

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G005301_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726940	0.0	KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008645615.1	1e-179	ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	1e-46	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A060CVD8	1e-178	A0A060CVD8_MAIZE; AP2-EREBP transcription factor (Fragment)
STRING	GRMZM2G005301_P01	1e-179	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP159	35	354
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	3e-25	ERF family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G005301_P01
Entrez Gene	103627054

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]