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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G005284_P01 |
Common Name | LOC103641851, ZEAMMB73_937745, Zm.32896 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
ARF |
Protein Properties |
Length: 588aa MW: 63905.5 Da PI: 8.7738 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G005284_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 64.1 | 2.1e-20 | 140 | 239 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
k+lt+sd+ + g l++ +++ae++ +++k+ ++ ++ +d +g +W++++ yr++++r +lt+GW++Fv+++++ gD+vvF ++++
GRMZM2G005284_P01 140 KTLTKSDSYSGGSLSVRRTCAETIfpkldKSIKRPQQLVSARDVHGVEWTFRHVYRGTPERNLLTTGWSDFVNSKKIVIGDSVVFL--REED 229
89************************999666677789************************************************..5699 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
++ +++++r+
GRMZM2G005284_P01 230 GTIHIGLRRA 239
999***9997 PP
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2 | Auxin_resp | 90.6 | 2.8e-30 | 277 | 360 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a++ a+ +++Fevv++Pra+++ F+v+v+ v +al+v++++G Rfkmafe +d s++++ +Gtv+gv +dp rWp S+Wr L+
GRMZM2G005284_P01 277 AVTLAAAGNPFEVVHYPRATAPAFCVRVATVIEALQVSWCPGLRFKMAFEAKDLSRISWfMGTVAGVGPADPARWPLSPWRFLQ 360
6788999**************************************************************************997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 588 aa
Download sequence Send
to blast |
MSPEACELTL APRMPASQAG AGAGAEPETK GSVHPQLWYA CAGPTCTVPP VGTAVYYFPQ 60 GHAEHAGAAA DANLHAPPFV PCRVAGVRFM AELDTDEIFV KIRLDPLRSG EPLTDVGEAQ 120 VVNDEAGQRQ PTRPVISSAK TLTKSDSYSG GSLSVRRTCA ETIFPKLDKS IKRPQQLVSA 180 RDVHGVEWTF RHVYRGTPER NLLTTGWSDF VNSKKIVIGD SVVFLREEDG TIHIGLRRAE 240 RASRRNAYGR QLVRGNASGT GAAADGVLRA EDVVAAAVTL AAAGNPFEVV HYPRATAPAF 300 CVRVATVIEA LQVSWCPGLR FKMAFEAKDL SRISWFMGTV AGVGPADPAR WPLSPWRFLQ 360 VTWDEPELVR NMNRLSPWQV ELVATMPNLP HFAAPPTPTP PRKKPRMPTY KEYQSQGRQL 420 FDPVFPLNNP LPLPHPHHHP APTHDWNCHG FVHCSSFPFP DSIAPAAAAG IQGARHANFA 480 QFLFSDHLLS NLRRSLVLGG IRQYPGDHHA APAPRIPIPT DDVKTGSETP RSPSHATKKR 540 DGVKPPGIRL FGQEILTEEQ MKGSHDGKAT NNTSGRSGAP EFGLEPGQ
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |