PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G004641_P03 | ||||||||
Common Name | HB64, LOC100280342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 587aa MW: 62181.8 Da PI: 6.229 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.3e-08 | 354 | 391 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ qV++WF N R + GRMZM2G004641_P03 354 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 391 554459******************************88 PP | |||||||
2 | BELL | 109.6 | 1.8e-35 | 216 | 287 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k + L+ ll++Vd++Y++y++q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+da+ q+ GRMZM2G004641_P03 216 ERQDLQNKVSALMALLDQVDRKYRHYHHQMQMVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAVGAQV 287 799*****************************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.3E-48 | 139 | 285 | IPR006563 | POX domain |
Pfam | PF07526 | 1.6E-47 | 145 | 283 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 332 | 395 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-9 | 335 | 399 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.25E-12 | 335 | 396 | No hit | No description |
SuperFamily | SSF46689 | 4.15E-17 | 336 | 403 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 338 | 401 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-17 | 352 | 391 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MATFFSTSTN QRDLAGGGGD MSSFHHYAYS DPPAGGLMPF PATIVSSEGH VAHGGDDGGR 60 GAFVDVNARD GPTGGAEMGL QTQLLMANAA SAVQHQGLSL SLGTQGVPVS LYQYRQAEAG 120 MAAAAFLSPN QASVAATRSA QSIYVQNSRY LKAARELLDE VVNVQDAIKR KGDKSQQGKD 180 SGGGGGGGEG KDAETSDEKA GEHEGNSSAP ELSPSERQDL QNKVSALMAL LDQVDRKYRH 240 YHHQMQMVMS SFDAVAGAGA ARPYTALALQ TISRHFRSLR DAVGAQVQSL RRSLGEKDGS 300 AQGGGLPRLR YIDQQLRQQR AMQQFGMMQQ PQHAWRPQRG LPESAVSVLR AWLFEHFLHP 360 YPKDSEKLML ARQTGLSRGQ VSNWFINARV RLWKPMIEEM YREEFGAEMD SHSSSENAAG 420 NKGKDEAISS EDHEEFQSPS SAAAAAVPLP GHLSAFKSEA IGVMDAAGIG ASSSLDGAVI 480 GPYATSLNLG GGGGILQEAL AHHHHHHGGA DARFVQAYGD MAGFGGYDGG SVSLTLGLQH 540 CNEAGAGAGP AEPQALLYGS AGDFDFISGS EDRQRFGSSQ LLHDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5bng_A | 1e-17 | 341 | 399 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-17 | 341 | 399 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G004641 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G004641_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728497 | 0.0 | KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001342700.1 | 0.0 | uncharacterized protein LOC100280342 | ||||
Refseq | XP_023157783.1 | 0.0 | uncharacterized protein LOC100280342 isoform X1 | ||||
Refseq | XP_023157785.1 | 0.0 | uncharacterized protein LOC100280342 isoform X1 | ||||
Refseq | XP_023157786.1 | 0.0 | uncharacterized protein LOC100280342 isoform X1 | ||||
Refseq | XP_023157787.1 | 0.0 | uncharacterized protein LOC100280342 isoform X1 | ||||
TrEMBL | A0A060D8L1 | 0.0 | A0A060D8L1_MAIZE; BEL1-like homeodomain protein 3 (Fragment) | ||||
STRING | GRMZM2G004641_P04 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-102 | BEL1-like homeodomain 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G004641_P03 |