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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G003944_P01 |
Common Name | LOC100382180, TCP2, ZEAMMB73_532685 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
TCP |
Protein Properties |
Length: 387aa MW: 40760 Da PI: 9.78 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G003944_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 136.8 | 1.8e-42 | 107 | 229 | 1 | 120 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas..nsssgk 89
aag k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s+a+ ++ss++
GRMZM2G003944_P01 107 AAGSKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAAGasHPSSAS 198
5899******************************************************************9998677776666622444445 PP
TCP 90 aaksaakskksqksaasalnlakesrakara 120
+a + ++ ++q++ a++l ++++ +++++
GRMZM2G003944_P01 199 RAVAFHHLPPPQHEVAAMLGWNHHHPHQQQQ 229
5555557777778888788777755533322 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MDAPSSSTST STNSSRSASE QQHHHQQQQQ RYHHHHQAAG HQPFYYAAAS AAGMAQFMGS 60 RAIAPAVPVD VQLAQQQQQS SAAAAAAPAG SSGAAADKTK AVVPAAAAGS KRPTKDRHTK 120 VEGRGRRIRM PALCAARVFQ LTRELGHKTD GETIEWLLQQ AEPAIVAATG TGTIPANFSS 180 LAVSLRSAAG ASHPSSASRA VAFHHLPPPQ HEVAAMLGWN HHHPHQQQQQ QLLPPPPQQQ 240 APQDPGAGEF MRKRYREGDD DLFKDPAARQ HHPDGGDAEE HKARVTPATA MWAVAPNSAG 300 AGAFWMQPTW AFGGGGSTVQ APLQFMSTRS ANNFPAGTTM DANIGMLAAL NASGGVQQQD 360 EGQTREMAQR HRGANGGDAG RGAASPQ
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ726897 | 0.0 | KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds. |