PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G003927_P01 | ||||||||
Common Name | LOC100276104, Ra1, ramosa1, Zm.124956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 175aa MW: 18767.9 Da PI: 7.1626 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.3e-06 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F++ L H++ H GRMZM2G003927_P01 46 YTCGYCKKEFRSAQGLGGHMNIH 68 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.15E-6 | 44 | 72 | No hit | No description |
PROSITE profile | PS50157 | 10.803 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.0E-6 | 46 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEGEDDGAQM KLQQQQQSPC SDNLSLSAAS SWLPPQVRSS SSSSSYTCGY CKKEFRSAQG 60 LGGHMNIHRL DRARLIHQQY TSHRIAAPHP NPNPSCTSVL DLELSLSSLL AHGAASSDGG 120 LSVPVAKLAG NRFSSASLPT TKDVEGKNLE LRIGACSHGD GAEERLDLQL RLGYY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.124956 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G003927 |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G003927_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ013187 | 0.0 | DQ013187.1 Zea mays cultivar KUI2007 ramosa 1 (Ra1) gene, complete cds. | |||
GenBank | DQ013188 | 0.0 | DQ013188.1 Zea mays cultivar TX601 ramosa 1 (Ra1) gene, complete cds. | |||
GenBank | DQ013189 | 0.0 | DQ013189.1 Zea mays cultivar Ki21 ramosa 1 (Ra1) gene, complete cds. | |||
GenBank | DQ013190 | 0.0 | DQ013190.1 Zea mays cultivar CML258 ramosa 1 (Ra1) gene, complete cds. | |||
GenBank | DQ013191 | 0.0 | DQ013191.1 Zea mays cultivar CML254 ramosa 1 (Ra1) gene, complete cds. | |||
GenBank | EU960055 | 0.0 | EU960055.1 Zea mays clone 221477 hypothetical protein mRNA, complete cds. | |||
GenBank | GQ891913 | 0.0 | GQ891913.1 Zea mays subsp. mexicana clone teo21_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891919 | 0.0 | GQ891919.1 Zea mays subsp. parviglumis clone teo27_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891925 | 0.0 | GQ891925.1 Zea mays subsp. mays clone LR29_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891928 | 0.0 | GQ891928.1 Zea mays subsp. mays clone LR12_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891930 | 0.0 | GQ891930.1 Zea mays subsp. mays clone LR52_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891932 | 0.0 | GQ891932.1 Zea mays subsp. mays clone LR57_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891933 | 0.0 | GQ891933.1 Zea mays subsp. mays clone LR57_2 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891934 | 0.0 | GQ891934.1 Zea mays subsp. mays clone LR2_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891935 | 0.0 | GQ891935.1 Zea mays subsp. mays clone LR30_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891937 | 0.0 | GQ891937.1 Zea mays subsp. mays clone LR39_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891938 | 0.0 | GQ891938.1 Zea mays subsp. mays clone LR34_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891939 | 0.0 | GQ891939.1 Zea mays subsp. mays clone LR40_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891941 | 0.0 | GQ891941.1 Zea mays subsp. mays clone LR35_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. | |||
GenBank | GQ891944 | 0.0 | GQ891944.1 Zea mays subsp. mays clone LR22_1 ramosa1 C2H2 zinc-finger transcription factor (ra1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143449.1 | 1e-126 | ramosa 1 | ||||
TrEMBL | A0A3L6E4L6 | 1e-125 | A0A3L6E4L6_MAIZE; Transcriptional regulator SUPERMAN | ||||
TrEMBL | D0UTZ4 | 1e-125 | D0UTZ4_ZEAMP; Ramosa1 C2H2 zinc-finger transcription factor | ||||
TrEMBL | D0UU07 | 1e-125 | D0UU07_ZEAMM; Ramosa1 C2H2 zinc-finger transcription factor | ||||
TrEMBL | D0UU19 | 1e-125 | D0UU19_MAIZE; Ramosa1 C2H2 zinc-finger transcription factor | ||||
TrEMBL | Q4U4A8 | 1e-125 | Q4U4A8_MAIZE; Ramosa 1 | ||||
STRING | GRMZM2G003927_P01 | 1e-125 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22243 | 6 | 7 | Representative plant | OGRP19586 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 2e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G003927_P01 |
Entrez Gene | 100276104 |
Publications ? help Back to Top | |||
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