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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G003509_P01 |
Common Name | LOC100279785 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
HD-ZIP |
Protein Properties |
Length: 854aa MW: 92572.6 Da PI: 6.9771 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G003509_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 50.5 | 3.6e-16 | 24 | 81 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
++t+eq+++Le ++ ++++ps +r++L + + +++ rq+kvWFqNrR +ek+
GRMZM2G003509_P01 24 YVRYTAEQVDALELAYGECPKPSSLRRQQLIRDCavltNVEPRQIKVWFQNRRCREKQ 81
5789***************************9999999******************97 PP
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2 | START | 163.2 | 1.9e-51 | 173 | 380 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91
+aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++++++l vi +g g++
GRMZM2G003509_P01 173 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSVGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRASWYRDCRRVDILHVIPTGngGTI 263
68999*****************************************************.8888888888*********************** PP
EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
+l++++++al++l+ Rdf+++Ry+ l +g++vi+++S+++ + p+ ++ ++Rae+lpSg+li+p+++g+s + +v+hvdl++ ++++
GRMZM2G003509_P01 264 ELIYMQTYALTTLAEpRDFWTLRYTSGLDDGSLVICERSLTHSTGGPSgpkTPDFIRAEVLPSGYLIRPCDGGGSMIYIVDHVDLNACSVPE 355
**********998866*****************************999999***************************************** PP
HHHHHHHHHHHHHHHHHHHHTXXXX CS
START 180 llrslvksglaegaktwvatlqrqc 204
+lr+l++s + ++k++ a+l++ +
GRMZM2G003509_P01 356 VLRPLYESPKILAQKMTAAALRHIR 380
********************99765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 854 aa
Download sequence Send
to blast |
MASSRGRLRL SPRAAAPQLD AGKYVRYTAE QVDALELAYG ECPKPSSLRR QQLIRDCAVL 60 TNVEPRQIKV WFQNRRCREK QRRESSRLQT VNRKLGAMNK LLMEENDRLQ KQVSRLVFDN 120 GYMKNRLHSP SVATTDTSCE SVVTSGQHKQ QQNPAVLHPP QRDANNPAGL LAIAEETLAE 180 FMSKATGTAV NWVQMVGMKP GPDSVGIIAV SHNCSGVAAR ACGLVSLEPT KVAEILKDRA 240 SWYRDCRRVD ILHVIPTGNG GTIELIYMQT YALTTLAEPR DFWTLRYTSG LDDGSLVICE 300 RSLTHSTGGP SGPKTPDFIR AEVLPSGYLI RPCDGGGSMI YIVDHVDLNA CSVPEVLRPL 360 YESPKILAQK MTAAALRHIR QIAHESSGET PYGAGRQPAV LRTFSQRLSR GFNDAVSGFP 420 DDGWSSLLSS DGAEDISITI NSSPNKLIGS DVSPSPFFSA MGGGIMCAKA SMLLQNVPPA 480 LLVRFLREHR SEWADPGVDA YSAASLRANP YNVPGLRAGG FMGNQVILPL ARTVEHEECL 540 EVIRLQGHGF SHDEVLMSPD MFLLQLCSGI DEDAPGACAQ LVFAPIDESF ADDAPLLPSG 600 FRVIPLDAKT DVPSATRTLD LASALEVGSG GGLCALSDSG SGTRSTRSVL TIAFQFSFEN 660 HLRESVAAMA RQYVRAVMAI VQRVAMAISP SRLGPHVELK HPPGSPEALA LASWIGRSYR 720 AHTGTEIRWS DTEDAAGSPL TLFWKHSDAI ICCSLKPAFT LKFANSAGFD ILETTVANVQ 780 DLQLEAVLDD GGQKALVAQL PKIMLQGLAY LPGGVCRSSM GRQASYEQAV AWKVVGDDGA 840 PQCLALMFVN WTFI
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT054873 | 0.0 | BT054873.1 Zea mays full-length cDNA clone ZM_BFc0170L18 mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Itoh J,Hibara K,Sato Y,Nagato Y
Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] - Luan W, et al.
Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice. Sci China Life Sci, 2013. 56(12): p. 1113-23 [PMID:24302292]
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