PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G003509_P01
Common NameLOC100279785
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 854aa    MW: 92572.6 Da    PI: 6.9771
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G003509_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.53.6e-162481457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++t+eq+++Le ++ ++++ps  +r++L + +    +++ rq+kvWFqNrR +ek+
  GRMZM2G003509_P01 24 YVRYTAEQVDALELAYGECPKPSSLRRQQLIRDCavltNVEPRQIKVWFQNRRCREKQ 81
                       5789***************************9999999******************97 PP
2START163.21.9e-511733802204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l vi +g  g++
  GRMZM2G003509_P01 173 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSVGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRASWYRDCRRVDILHVIPTGngGTI 263
                        68999*****************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++al++l+  Rdf+++Ry+  l +g++vi+++S+++ +  p+   ++ ++Rae+lpSg+li+p+++g+s + +v+hvdl++ ++++
  GRMZM2G003509_P01 264 ELIYMQTYALTTLAEpRDFWTLRYTSGLDDGSLVICERSLTHSTGGPSgpkTPDFIRAEVLPSGYLIRPCDGGGSMIYIVDHVDLNACSVPE 355
                        **********998866*****************************999999***************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        +lr+l++s  + ++k++ a+l++ +
  GRMZM2G003509_P01 356 VLRPLYESPKILAQKMTAAALRHIR 380
                        ********************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.3491882IPR001356Homeobox domain
SMARTSM003895.3E-132086IPR001356Homeobox domain
SuperFamilySSF466892.1E-142284IPR009057Homeodomain-like
CDDcd000869.35E-152380No hitNo description
PfamPF000461.2E-132481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-172581IPR009057Homeodomain-like
CDDcd146863.71E-575114No hitNo description
PROSITE profilePS5084827.96163363IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-23171354IPR023393START-like domain
SMARTSM002347.1E-43172382IPR002913START domain
SuperFamilySSF559611.37E-36173383No hitNo description
PfamPF018522.5E-49173380IPR002913START domain
PfamPF086702.2E-37710853IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006479Biological Processprotein methylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008276Molecular Functionprotein methyltransferase activity
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MASSRGRLRL SPRAAAPQLD AGKYVRYTAE QVDALELAYG ECPKPSSLRR QQLIRDCAVL  60
TNVEPRQIKV WFQNRRCREK QRRESSRLQT VNRKLGAMNK LLMEENDRLQ KQVSRLVFDN  120
GYMKNRLHSP SVATTDTSCE SVVTSGQHKQ QQNPAVLHPP QRDANNPAGL LAIAEETLAE  180
FMSKATGTAV NWVQMVGMKP GPDSVGIIAV SHNCSGVAAR ACGLVSLEPT KVAEILKDRA  240
SWYRDCRRVD ILHVIPTGNG GTIELIYMQT YALTTLAEPR DFWTLRYTSG LDDGSLVICE  300
RSLTHSTGGP SGPKTPDFIR AEVLPSGYLI RPCDGGGSMI YIVDHVDLNA CSVPEVLRPL  360
YESPKILAQK MTAAALRHIR QIAHESSGET PYGAGRQPAV LRTFSQRLSR GFNDAVSGFP  420
DDGWSSLLSS DGAEDISITI NSSPNKLIGS DVSPSPFFSA MGGGIMCAKA SMLLQNVPPA  480
LLVRFLREHR SEWADPGVDA YSAASLRANP YNVPGLRAGG FMGNQVILPL ARTVEHEECL  540
EVIRLQGHGF SHDEVLMSPD MFLLQLCSGI DEDAPGACAQ LVFAPIDESF ADDAPLLPSG  600
FRVIPLDAKT DVPSATRTLD LASALEVGSG GGLCALSDSG SGTRSTRSVL TIAFQFSFEN  660
HLRESVAAMA RQYVRAVMAI VQRVAMAISP SRLGPHVELK HPPGSPEALA LASWIGRSYR  720
AHTGTEIRWS DTEDAAGSPL TLFWKHSDAI ICCSLKPAFT LKFANSAGFD ILETTVANVQ  780
DLQLEAVLDD GGQKALVAQL PKIMLQGLAY LPGGVCRSSM GRQASYEQAV AWKVVGDDGA  840
PQCLALMFVN WTFI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1258000.0embryo| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G003509
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G003509_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548730.0BT054873.1 Zea mays full-length cDNA clone ZM_BFc0170L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146215.10.0putative homeobox/lipid-binding domain family protein
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLB7ZZY10.0B7ZZY1_MAIZE; Homeobox-leucine zipper protein ATHB-14
STRINGGRMZM2G003509_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]