PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G002915_P01
Common NameHB34, LOC100384387
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 283aa    MW: 31224.8 Da    PI: 5.1227
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G002915_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.28.7e-1689150256
                        T--SS--HHHHHHHHHHHH......H.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFe......k.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++++t+eq++eLe  Fe      + +r++  e++ eLA++lg+  rqV vWFqNrRa+++
  GRMZM2G002915_P01  89 TTKRRLTAEQVRELELSFEeekrklEpKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWR 150
                        67889**************88887745899999****************************9 PP
2HD-ZIP_I/II105.64e-3490187292
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.k......LeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                         krrl++eqv+ LE sFeee+ k      LeperK+elar+Lg+ prqvavWFqnrRAR+++kqlE+d+++L++a+d l + +++L +++++
  GRMZM2G002915_P01  90 TKRRLTAEQVRELELSFEEEKrKlepkrkLEPERKSELARRLGIAPRQVAVWFQNRRARWRSKQLEQDFDRLRAAHDDLIAGRDALLADNDR 181
                        59***************99865511111156678899******************************************************* PP

        HD-ZIP_I/II  87 Lreelk 92 
                        Lr+++ 
  GRMZM2G002915_P01 182 LRSQVI 187
                        **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.59E-1576154IPR009057Homeodomain-like
PROSITE profilePS5007117.0785152IPR001356Homeobox domain
SMARTSM003892.4E-1487156IPR001356Homeobox domain
PfamPF000465.2E-1388150IPR001356Homeobox domain
CDDcd000864.61E-1488153No hitNo description
Gene3DG3DSA:1.10.10.601.8E-1792159IPR009057Homeodomain-like
PRINTSPR000312.8E-6123132IPR000047Helix-turn-helix motif
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PRINTSPR000312.8E-6132148IPR000047Helix-turn-helix motif
PfamPF021831.3E-13152194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDPASSLISS SAVPFPAAGD GGGQRQVFLF GGGFVGGAPP LVGGAADGRR KRPFQLTAHD  60
ELQLQLQLQL DDELCGLDYE LHGPQQERTT KRRLTAEQVR ELELSFEEEK RKLEPKRKLE  120
PERKSELARR LGIAPRQVAV WFQNRRARWR SKQLEQDFDR LRAAHDDLIA GRDALLADND  180
RLRSQVITLT EKLQTKESAA AAAEPGEQTV AAQATAYAVL EGDKLCSGSA AAPAAAGTND  240
SPESYFAGAR SPPSSPEDDD RAFFFPPDAL LNNWAWVWND RQY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G002915
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G002915_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0700030.0BT070003.1 Zea mays full-length cDNA clone ZM_BFb0367A14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170401.10.0uncharacterized protein LOC100384387
RefseqXP_008668483.10.0putative homeobox DNA-binding and leucine zipper domain family protein isoform X1
SwissprotA3BYC16e-69HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLC0PNY40.0C0PNY4_MAIZE; HB transcription factor
STRINGGRMZM2G002915_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-30homeobox 1