PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G002225_P01
Common NameZm.162459
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 328aa    MW: 36438.7 Da    PI: 5.0472
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G002225_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.4e-092442772255
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  GRMZM2G002225_P01 244 WPYPSELEKAALAESTGLEAKQINNWFINQRKRH 277
                        59****************************9885 PP
2ELK34.64.1e-12197218122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++Ll+KYsgyL++L+ E+s
  GRMZM2G002225_P01 197 ELKNRLLNKYSGYLSNLWRELS 218
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.9E-1857101IPR005540KNOX1
PfamPF037906.3E-195997IPR005540KNOX1
SMARTSM012562.9E-26107158IPR005541KNOX2
PfamPF037915.8E-22113156IPR005541KNOX2
PfamPF037891.9E-9197218IPR005539ELK domain
SMARTSM011881.6E-6197218IPR005539ELK domain
PROSITE profilePS5121310.458197217IPR005539ELK domain
PROSITE profilePS5007112.746217280IPR001356Homeobox domain
SMARTSM003893.8E-11219284IPR001356Homeobox domain
SuperFamilySSF466892.65E-18219290IPR009057Homeodomain-like
CDDcd000861.10E-12220280No hitNo description
Gene3DG3DSA:1.10.10.606.3E-25222281IPR009057Homeodomain-like
PfamPF059201.1E-15237276IPR008422Homeobox KN domain
PROSITE patternPS000270255278IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEVEEELPAS ADLTGGSKQA TTTTPFYLAL DHTASATSSP PPAAPLPCAA NSERGSEIIK  60
AKIMSHPLYP AVLRAFIDCR KVGAPPEIVG RLSALADDVE MNSDDKQEQR RAADPELDQF  120
MEIYCHMLVR YRQELTRPIQ EADEFFRSME AQIDAFSLLD DNGYEGCGSS DEDEQEAVDL  180
GGLSVLETGS PSGEDNELKN RLLNKYSGYL SNLWRELSRK KKKGKLPRDA RQKLLHWWQL  240
HYRWPYPSEL EKAALAESTG LEAKQINNWF INQRKRHWKQ APPTMALATA NYMLGPHDGG  300
GSSSSASAAG LRVEEQYFTG GSSYPRGP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G002225
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G002225_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406220.0BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644253.10.0fused compound leaf 1 isoform X1
SwissprotQ75LX71e-127KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A3L6EXB20.0A0A3L6EXB2_MAIZE; Homeobox protein knotted-1-like 4
STRINGGRMZM2G002225_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-80KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Peng J, et al.
    Regulation of compound leaf development in Medicago truncatula by fused compound leaf1, a class M KNOX gene.
    Plant Cell, 2011. 23(11): p. 3929-43
    [PMID:22080596]