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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G001930_P01 |
Common Name | myc7, Zm.7143 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
bHLH |
Protein Properties |
Length: 705aa MW: 75479.3 Da PI: 6.7709 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G001930_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 39 | 1.4e-12 | 527 | 572 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L
GRMZM2G001930_P01 527 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 572
799***********************6.....5***************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009269 | Biological Process | response to desiccation |
GO:0009611 | Biological Process | response to wounding |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process |
GO:0010200 | Biological Process | response to chitin |
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity |
GO:2000068 | Biological Process | regulation of defense response to insect |
GO:0005634 | Cellular Component | nucleus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 705 aa
Download sequence Send
to blast |
MNLWTDDNAS MMEAFMASAD LPTFPWGAPA GGGNSSAAAA SPPPPQMPAA TAPGFNQDTL 60 QQRLQAMIEG SRETWTYAIF WQSSLDSATG ASLLGWGDGY YKGCDEDKRK QKPLTPSAQA 120 EQEHRKRVLR ELNSLISGAA AAPDEAVEEE VTDTEWFFLV SMTQSFLNGS GLPGQALFAG 180 QPTWIASGLS SAPCERARQA YNFGLRTMVC FPVGTGVLEL GSTDVVFKTA ESMAKIRSLF 240 GGGAGGGSWP PVQPQAPSSQ QPAAGADHAE TDPSMLWLAD APVMDIKDSL SHPSAEISVS 300 KPPPHPPQIH FENGSTSTLT ENPSPSVHAP PPPPAPAAPQ QRQHQHQNQA HQGPFRRELN 360 FSDFASTPSL AATPPFFKPE SGEILSFGAD SNARRNPSPV PPAATASLTT APGSLFSQHT 420 ATMTAAAAND AKNNNKRSME ATSRASNTNH HPAATANEGM LSFSSAPTTR PSTGTGAPAK 480 SESDHSDLDA SVREVESSRV VAPPPEAEKR PRKRGRKPAN GREEPLNHVE AERQRREKLN 540 QRFYALRAVV PNVSKMDKAS LLGDAISYIN ELRGKLTSLE TDKETLQTQV EALKKERDAR 600 PPSHSAGLGG HDGGPRCHAV EIDAKILGLE AMIRVQCHKR NHPSARLMTA LRELDLDVYH 660 ASVSVVKDLM IQQVAVKMAS RVYTQDQLSA ALYSRLAEPG SAMGR
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4rqw_A | 8e-63 | 53 | 240 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 8e-63 | 53 | 240 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 8e-63 | 53 | 240 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 8e-63 | 53 | 240 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 508 | 516 | KRPRKRGRK |
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Zm.7143 | 0.0 | embryo| glume| meristem| pedicel| pericarp |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in spikelets and floral organs. {ECO:0000269|PubMed:24647160}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF061107 | 0.0 | AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds. |