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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G001875_P01 |
Common Name | LOC542611, Zm.13907 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
MYB |
Protein Properties |
Length: 250aa MW: 26428.8 Da PI: 8.1132 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G001875_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.3 | 7.1e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEde l +v+++G+g +W t +++ g++R++k+c++rw++yl
GRMZM2G001875_P01 14 RGPWSPEEDEALRSYVQRHGSGgNWITMPKKAGLKRCGKSCRLRWLNYL 62
89*********************************************97 PP
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2 | Myb_DNA-binding | 46.6 | 7.8e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +T+eEd + + +qlG++ W++Ia+ m gRt++++k++w++
GRMZM2G001875_P01 69 GGFTAEEDAVIMSLYAQLGSK-WSLIASQME-GRTDNDVKNHWNT 111
569******************.*********.***********97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MGRTPCCDRA AVKRGPWSPE EDEALRSYVQ RHGSGGNWIT MPKKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTAEEDAVIM SLYAQLGSKW SLIASQMEGR TDNDVKNHWN TKLKKRLLAA 120 AAASSAPPPA PAPAPLSSTT LTSSLFPSLA IPTVKTEAYT CDDFLAPALG LGDPFAAAAA 180 AADGSTSAAS AASSASNNWS AAENGAGEAS LFLLDFCAGP DLAGADQLHL PGGYYYPLDP 240 ILPSSPRRYS
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous, with higher levels in roots, flowers, and shoot tips. Found in all cells of the shoot tips. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HF679416 | 0.0 | HF679416.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB10 protein. |