PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G001699_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 354aa    MW: 39159.9 Da    PI: 8.9254
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G001699_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP37.44.3e-121431841157
            E2F_TDP  11 qkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealn 57 
                        ++f+ l+++ + + + l+e+ak L    v  +rRRiYDi+NVLe+++
  GRMZM2G001699_P02 143 TSFMVLYNRDNVESIGLDEAAKCL---GV--ERRRIYDIVNVLEGVG 184
                        578999999888************...**..**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.49E-8138186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.3E-6139255IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-11142185IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.0E-9144184IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF561121.57E-5244297IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.5E-6245268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDVDSRMATE SDSDSDARGG SGSGSETPTA SSSPSVVSLA PTASSSPSPS THPTPRRTTA  60
RSRPSSRRRR APRPGDRPLA RGEALPCPSL NHVLPPPPST LPPHIPRTPR DESVHARVWI  120
RGWSPRCSRM MVSVMSLLKT ELTSFMVLYN RDNVESIGLD EAAKCLGVER RRIYDIVNVL  180
EGVGACGAPL RICLYDNCHP RIPNRRCPPL TRFLTSLTGD FSKGYNKWWS RNPNGVPQES  240
LGYKQAGIPH LKWFGVEGQY NVMVIDLLGP SLKGLFNYCS RKFSLKTVLM LADQMCLSNQ  300
EQIVELLERE KLEKKPQDPA AEPICLPIEF LKAITCNFST ERELGRCFGV DMVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3sv0_A3e-1924729664113Casein kinase I-like
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.828195e-67aerial organ| ear| endosperm| meristem| pericarp| pollen| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G001699
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G001699_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5309510.0AY530951.1 Zea mays putative growth-regulating factor 1 (Z214A02.12), putative 40S ribosomal protein S8 (Z214A02.25), and putative casein kinase I (Z214A02.27) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6QP490.0Q6QP49_MAIZE; Putative casein kinase I
STRINGGRMZM2G001699_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.18e-14DP-E2F-like 1