PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G000836_P01
Common NameLOC103630405
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 392aa    MW: 43816.2 Da    PI: 7.924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G000836_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05213232120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        + C+ C+k+F+r  n++ H+
  GRMZM2G000836_P01 213 FMCHVCSKTFNRYNNMQMHM 232
                        89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.73E-5209236No hitNo description
PROSITE profilePS5015710.284213240IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4213232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-4285319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009054anatomyinflorescence bract
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVVRRACAIM EGAFSVPYYE WLKPRSSPST SCWTTMTLST PSSMDRLLAA VAGGHDDDEE  60
RDATMCLPLL GRLEGRARTP EYHSPVKEEL SNNNTTTTTT GARGEESRTG AGVHLTIGLP  120
ATGGGAGGGY SMSSEEAPMD DEDDEQDEDY FELEEEDQKA SEHDNKCKME AAGEAEQRRP  180
GGEEEGIKSF VGSRGRRYWI PTPAQILVGP VQFMCHVCSK TFNRYNNMQM HMWGHGREYR  240
KGPESLRGTQ AATLALLKLP CYCCAPGCRN GVAHPRARPL KDFRTLQTHY RRKHGDKRFA  300
CRRCAKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH CSVTPDHHQQ  360
QQAPVPVPLI NKQPLDRMII RFDQGAPWTS HA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G000836
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G000836_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3592221e-166AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649681.10.0protein TRANSPARENT TESTA 1
SwissprotQ8W0315e-92ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A1D6M5520.0A0A1D6M552_MAIZE; Zinc finger protein WIP6
STRINGGRMZM2G000836_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-92WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]