PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

NF-YA

Protein Properties

Length: 244aa MW: 26600.5 Da PI: 9.3445

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G000686_P03	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106.9	1.7e-33	136	192	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh hA++R+Rg+gGrF GRMZM2G000686_P03 136 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 192 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-38	134	195	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	39.221	135	195	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.3E-29	137	192	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-24	138	160	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	140	160	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-24	169	192	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MRQNGAVMIQ FGHQMPDYDS PATQSTSETS HQEASGMSEG SLNEHNNDHS GNLDGYSKSD 60 ENKMMSALSL GNPETAYAHN PKPDRTQSFA ISYPYADPYY GGAVAAAYGP HAIMHPQLVG 120 MVPSSRVPLP IEPAAEEPIY VNAKQYHAIL RRRQLRAKLE AENKLVKSRK PYLHESRHLH 180 AMKRARGTGG RFLNTKQQPE SPGSGGSSDA QRVPATASGG LFTKHEHSLP PGGRHHYHAR 240 GGGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-23	136	204	2	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.85146	0.0	ear\| embryo\| endosperm\| meristem\| pollen\| shoot\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G000686

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G000686_P03

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054250	0.0	BT054250.1 Zea mays full-length cDNA clone ZM_BFb0198B09 mRNA, complete cds.
GenBank	BT069779	0.0	BT069779.1 Zea mays full-length cDNA clone ZM_BFb0282K22 mRNA, complete cds.
GenBank	EU967250	0.0	EU967250.1 Zea mays clone 300715 nuclear transcription factor Y subunit A-3 mRNA, complete cds.
GenBank	KM655746	0.0	KM655746.1 Zea mays NF-YA1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008664541.1	1e-180	NF-YA1 isoform X2
Refseq	XP_020402196.1	1e-180	NF-YA1 isoform X2
TrEMBL	B6TQI5	1e-179	B6TQI5_MAIZE; NF-YA1
STRING	GRMZM2G000686_P04	1e-177	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	7e-42	nuclear factor Y, subunit A6

Link Out ? help Back to Top
Phytozome	GRMZM2G000686_P03
Entrez Gene	100194365

Publications ? help Back to Top
Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034] Luan M, et al. Family-wide survey of miR169s and NF-YAs and their expression profiles response to abiotic stress in maize roots. PLoS ONE, 2014. 9(3): p. e91369 [PMID:24633051]