PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00007245.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 216aa MW: 24937.5 Da PI: 10.6451

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00007245.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.4	6.6e-12	27	58	15	46
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkl 46 R++ ++KKAeELS LC+++v++i++ + ++ FANhyb_rscf00007245.1.g00001.1 27 DRKKNVFKKAEELSKLCGVDVCLILYQRQSNI 58 6***********************99876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.853	12	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-10	24	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-9	28	55	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MTFRNMDPQR NIQQLSSSKS DRKKVRDRKK NVFKKAEELS KLCGVDVCLI LYQRQSNIAE 60 TWPQDPEQVK RIVAGYKANP AIRDASIPSS EIKGLKESRA RKSDGGHWIK GLKESRARKS 120 SREMLYPTWD DRLDYCTEKE LIRLVASLDA KLEASTKRID SLSRKSSKSG ALDHHHMVNS 180 NLNSVPFREI NDLRRSSRNY IPSMQLKRSS NMQYPI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301593.1	1e-155	PREDICTED: MADS-box transcription factor PHERES 1-like
STRING	XP_004301593.1	1e-154	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34846	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	7e-12	AGAMOUS-like 82