PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00007089.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 112aa    MW: 12355.6 Da    PI: 4.7695
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00007089.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.3e-071558344
                                    SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                    +WT+   + +  a +++ ++   +W+ Iar +g ++t++++k ++
  FANhyb_rscf00007089.1.g00001.1 15 SWTAKQNKTFEIALALFSKDtpdRWDNIARIVG-NKTPEEVKRHY 58
                                    6*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.3E-51264IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-111470IPR009057Homeodomain-like
PROSITE profilePS500906.1441462IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.8E-51566IPR009057Homeodomain-like
CDDcd001671.59E-51662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MASAGSMSSL TSVSSWTAKQ NKTFEIALAL FSKDTPDRWD NIARIVGNKT PEEVKRHYDL  60
LLEDVKLIES GEVPFPDYRT SGGSGNGHGK EDDEPEAPLN DQHKEKSHEA VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-32884379RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304977.11e-69PREDICTED: protein RADIALIS-like 4
SwissprotF4JVB81e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2P6R7445e-40A0A2P6R744_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004304977.15e-69(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-35RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]