PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00006996.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 94aa MW: 10586 Da PI: 8.5173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.5 | 2.1e-07 | 24 | 60 | 18 | 54 |
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ++Lr+l+P+ + +s K+s + +L++++ YI++L FANhyb_rscf00006996.1.g00001.1 24 ELVSKLRQLVPEiR-DRRSDKVSASKVLQETCSYIRNL 60 56689*******76.99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.921 | 6 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-8 | 21 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-9 | 22 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-5 | 24 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MSSRRSSRQS SSGSPSIKDD QIIELVSKLR QLVPEIRDRR SDKVSASKVL QETCSYIRNL 60 HREVDDLSER LSQLLATIDA DSAEAAIIRS LIMQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215199.1 | 3e-50 | transcription factor PRE6 | ||||
Refseq | XP_008230751.1 | 3e-50 | PREDICTED: transcription factor PRE6-like | ||||
Refseq | XP_020416554.1 | 3e-50 | transcription factor PRE6 | ||||
Refseq | XP_021818928.1 | 3e-50 | transcription factor PRE6-like | ||||
Swissprot | Q9LJX1 | 2e-37 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A314YUW4 | 7e-49 | A0A314YUW4_PRUYE; Transcription factor PRE6 | ||||
TrEMBL | M5X4F0 | 7e-49 | M5X4F0_PRUPE; Uncharacterized protein | ||||
STRING | XP_008230751.1 | 1e-49 | (Prunus mume) | ||||
STRING | EMJ16398 | 1e-49 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF567 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 2e-37 | bHLH family protein |