PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00006923.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22934.3 Da PI: 6.1312 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124 | 7.8e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C aCk+lrr+C+++C++apyf++e+ + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v+ FANhyb_rscf00006923.1.g00001.1 7 PCGACKFLRRRCVRGCIFAPYFCHENgATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVS 85 7***********************9989*************************************************** PP DUF260 79 vilklqqqleqlkaelallkee 100 +i++lqqq+ +l+a+la++k++ FANhyb_rscf00006923.1.g00001.1 86 HIFALQQQVVNLQAQLASIKDQ 107 *****************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.083 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRRCVR GCIFAPYFCH ENGATHFAAI HKVFGASNVS KLLAHLPVSD 60 RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASIKDQAPQ SFVNGSEAVA 120 NPNQNCFPDL ENSSNSVPQV NSDYHINYGG TASYHENGIM SSNSIGSSNY DQNSGIRDEN 180 ASYGSFEEVS PSLQSSFNMQ MNNRQYWESL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289920.1 | 1e-152 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9SLB6 | 5e-67 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | A0A2P6PVG0 | 1e-133 | A0A2P6PVG0_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004289920.1 | 1e-152 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 1e-57 | LBD family protein |
Publications ? help Back to Top | |||
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