PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00006133.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 201aa    MW: 21987.7 Da    PI: 8.45
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00006133.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.1e-21122172255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAaka++ a+ kl+g
  FANhyb_rscf00006133.1.g00001.1 122 HYRGVRRRP-WGKYAAEIRDPNKRG--SRVWLGTFDTAVEAAKAYDLAAFKLRG 172
                                     7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-32121181IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-23122182IPR016177DNA-binding domain
SMARTSM003807.0E-39122186IPR001471AP2/ERF domain
PROSITE profilePS5103224.829122180IPR001471AP2/ERF domain
PfamPF008478.8E-15122172IPR001471AP2/ERF domain
CDDcd000185.70E-32122180No hitNo description
PRINTSPR003678.0E-11123134IPR001471AP2/ERF domain
PRINTSPR003678.0E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEQASALDMF SQHLLSEFSS MESFISSLNN CTSIIDQSPQ ADDYLVSDYL LPSEPEFEFE  60
TKPQIVHSPK KNSTLSHRKP AINVAIPAKA ATVTSVTPVE TTASAGVTVS QSSTNSENEA  120
RHYRGVRRRP WGKYAAEIRD PNKRGSRVWL GTFDTAVEAA KAYDLAAFKL RGSKAILNFP  180
LEINSNLAAA QPLQASVVGR K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-31119186269ATERF1
3gcc_A2e-31119186269ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307779.11e-131PREDICTED: ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3Q8TA141e-128A0A3Q8TA14_FRAAN; Transcription factor ERF76
STRINGXP_004307779.11e-130(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-42ERF family protein