PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00005690.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 176aa MW: 19978.4 Da PI: 7.57

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00005690.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.4	6.6e-35	10	104	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 aCa+Ck++r+kC ++C lapyfpa++ ++f+n+hklFG+sn++k+++ +++++r++a++s++ e++a+ +d v+G++g+ FANhyb_rscf00005690.1.g00001.1 10 ACASCKHQRKKCDSNCELAPYFPASKYNEFQNAHKLFGVSNIVKIMSWIEPHQRQAAADSILIEGNAWKNDHVHGCYGL 88 7**************************************************************************** PP DUF260 80 ilklqqqleqlkaela 95 i++l q ++l +++ FANhyb_rscf00005690.1.g00001.1 89 IKHLAAQPDELMGDVK 104 *****999877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.045	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-33	10	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
ESSPSPVNHA CASCKHQRKK CDSNCELAPY FPASKYNEFQ NAHKLFGVSN IVKIMSWIEP 60 HQRQAAADSI LIEGNAWKND HVHGCYGLIK HLAAQPDELM GDVKVFERGH NYWSNLVGTA 120 DEERSFDMEL RDEDGNPSTS FNGQAAGESR RLNNAWSLWT KKKLQKMRLL AWNIYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-21	11	95	12	96	LOB family transfactor Ramosa2.1
5ly0_B	2e-21	11	95	12	96	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011460121.1	1e-91	PREDICTED: LOB domain-containing protein 9-like
TrEMBL	A0A2P6RKC8	6e-51	A0A2P6RKC8_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_008241869.1	2e-42	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14432	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-29	LOB domain-containing protein 22