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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00005688.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 26629.8 Da PI: 5.4982 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.2 | 6.4e-27 | 18 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk......kvka.eekewyfFskrdkkyatg 71 lppG++F+P e+l+v+yL++k++g+++ e ++ +d+y k ePw++ + ++k e++++yfF++ ++k+++g FANhyb_rscf00005688.1.g00001.1 18 LPPGYKFRPDKEQLLVHYLRPKLDGEDFAQ-ELVPFCDLYgKKEPWQIWNdyfqelSAKDkERTDLYFFTQLKTKTPKG 95 79*************************988.89*****99456*****644566542222133477************* PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ +r++ sg+Wk kevl+++++++g ++ + + +++ ++++ +W+mhe++l FANhyb_rscf00005688.1.g00001.1 96 KHIKRTVGSGTWKGEDAPKEVLAASQRVIGKRRRFRYG-NDKDSAQNDRWLMHEFEL 151 ************************************98.6777889*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-30 | 11 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.389 | 18 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-17 | 19 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MCASCPSVQN PMAVDDDLPP GYKFRPDKEQ LLVHYLRPKL DGEDFAQELV PFCDLYGKKE 60 PWQIWNDYFQ ELSAKDKERT DLYFFTQLKT KTPKGKHIKR TVGSGTWKGE DAPKEVLAAS 120 QRVIGKRRRF RYGNDKDSAQ NDRWLMHEFE LDASLLRNKR KAKDYVLCIL RKKSRSVKKN 180 SEDQEGDETS CDGGDDQQDG DLPEAKKNND HKDSETVSLE EMENLLMSDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-20 | 17 | 179 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-20 | 17 | 179 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-20 | 17 | 179 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-20 | 17 | 179 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-20 | 17 | 179 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-20 | 17 | 179 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-20 | 17 | 179 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-20 | 17 | 179 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-20 | 17 | 179 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-20 | 17 | 179 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-20 | 17 | 179 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-20 | 17 | 179 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-20 | 17 | 179 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-20 | 17 | 179 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298024.2 | 1e-170 | PREDICTED: NAC domain-containing protein 19-like | ||||
TrEMBL | A0A314XVL4 | 2e-48 | A0A314XVL4_PRUYE; Uncharacterized protein | ||||
STRING | XP_004298024.1 | 1e-160 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 3e-22 | NAC domain containing protein 19 |