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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00005567.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11198.8 Da PI: 10.6034 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5.1e-19 | 43 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw++ FANhyb_rscf00005567.1.g00001.1 43 RGVWSQEEDRILSRLVSKFGARNWTLIARGIP-GRCGKSCRLRWFNQ 88 899*****************************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.074 | 38 | 93 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.59E-18 | 39 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-15 | 42 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-18 | 43 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-22 | 45 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-14 | 46 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MEPELAEDSA AVIGIDASED DVGSGKDAVA KGEKGKKRKS RVRGVWSQEE DRILSRLVSK 60 FGARNWTLIA RGIPGRCGKS CRLRWFNQLD PILKRKPFSG N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-15 | 42 | 99 | 6 | 63 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302679.1 | 2e-61 | PREDICTED: transcription factor LAF1 | ||||
Swissprot | O04192 | 2e-24 | MYB25_ARATH; Transcription factor MYB25 | ||||
TrEMBL | A0A2P6R9E2 | 6e-42 | A0A2P6R9E2_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004302679.1 | 6e-61 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20092 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 9e-26 | myb domain protein 109 |
Publications ? help Back to Top | |||
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