PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005212.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 387aa    MW: 42832.6 Da    PI: 9.3264
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005212.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.12.8e-2964147186
                        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                     rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k++e gf+rs+k+Ckek+en+ k+++++keg+ ++++++  t+
  FANhyb_rscf00005212.1.g00001.1  64 RWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLAELGFHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TY 140
                                     8********************************************************************975544..6* PP

                        trihelix  80 pyfdqle 86 
                                     ++fdql+
  FANhyb_rscf00005212.1.g00001.1 141 RFFDQLQ 147
                                     *****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.0E-461123IPR001005SANT/Myb domain
CDDcd122036.18E-2563128No hitNo description
PfamPF138374.8E-1963149No hitNo description
PROSITE profilePS500906.82963121IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MLGNLGSSSD ATTATATAVE PFGAHEGGGG DGGVGSNSGE EEKNSYSRGG GGDEFGDRSF  60
GGNRWPRQET LALLKIRSDM DVAFRDASVK GPLWDEVSRK LAELGFHRSA KKCKEKFENV  120
YKYHRRTKEG RTGKSEGKTY RFFDQLQALE NQPPTPTTPN STTTHQPRPQ PTIAMAVSNP  180
PPLPTISHIN STSTNSTNTV PSAAPHQGIA TPTIPSSLFP PTNPIIFTPP PQPPPQQNPT  240
SHHQHHQATT FVPPSTFPSI SSTDLMSNST SSSTSSDEEM EGRAKRKRKW KDFFETLMKQ  300
VVHKQDDLQK RFLEAIEKRE HERMAREEAW RMQEMARINR EREILAQERS IAAAKDSAVM  360
SFLQKIAEQQ HNPQATPTIT PNNHLVT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290520.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391178e-82TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2H4NFX10.0A0A2H4NFX1_FRAAN; Trihelix transcription factor GT-2B
STRINGXP_004290520.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.27e-71Trihelix family protein