PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00005212.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 387aa MW: 42832.6 Da PI: 9.3264 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.1 | 2.8e-29 | 64 | 147 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k++e gf+rs+k+Ckek+en+ k+++++keg+ ++++++ t+ FANhyb_rscf00005212.1.g00001.1 64 RWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLAELGFHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TY 140 8********************************************************************975544..6* PP trihelix 80 pyfdqle 86 ++fdql+ FANhyb_rscf00005212.1.g00001.1 141 RFFDQLQ 147 *****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.0E-4 | 61 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.18E-25 | 63 | 128 | No hit | No description |
Pfam | PF13837 | 4.8E-19 | 63 | 149 | No hit | No description |
PROSITE profile | PS50090 | 6.829 | 63 | 121 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MLGNLGSSSD ATTATATAVE PFGAHEGGGG DGGVGSNSGE EEKNSYSRGG GGDEFGDRSF 60 GGNRWPRQET LALLKIRSDM DVAFRDASVK GPLWDEVSRK LAELGFHRSA KKCKEKFENV 120 YKYHRRTKEG RTGKSEGKTY RFFDQLQALE NQPPTPTTPN STTTHQPRPQ PTIAMAVSNP 180 PPLPTISHIN STSTNSTNTV PSAAPHQGIA TPTIPSSLFP PTNPIIFTPP PQPPPQQNPT 240 SHHQHHQATT FVPPSTFPSI SSTDLMSNST SSSTSSDEEM EGRAKRKRKW KDFFETLMKQ 300 VVHKQDDLQK RFLEAIEKRE HERMAREEAW RMQEMARINR EREILAQERS IAAAKDSAVM 360 SFLQKIAEQQ HNPQATPTIT PNNHLVT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290520.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2 | ||||
Swissprot | Q39117 | 8e-82 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2H4NFX1 | 0.0 | A0A2H4NFX1_FRAAN; Trihelix transcription factor GT-2B | ||||
STRING | XP_004290520.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 7e-71 | Trihelix family protein |