PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00005148.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 503aa    MW: 56367.8 Da    PI: 6.7901
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00005148.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.35.7e-1341335021373
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                     l++lL++cAea+s++++   ++l+++ +  +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +   s++ l+
  FANhyb_rscf00005148.1.g00001.1 133 LRKLLIACAEALSDNNMDGFEKLIEKARGAVSISGEPIQRLGAYMVEGLVARKEASGSNIYRALRCREPE---SDDLLS 208
                                     689******************************************************************9...9***** PP

                            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156
                                     ++++++e++P+lkf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + +
  FANhyb_rscf00005148.1.g00001.1 209 YMHILYEICPYLKFGYMAANGAIADACRNEDRIHIIDFQIAQGTQWVTLLQALAARPSGAPHVRITGIDDPVSKyaRGD 287
                                     ***********************************************************************999999** PP

                            GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                      le++g+rL+ + e++++p+ef+  v     d+++++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vksls
  FANhyb_rscf00005148.1.g00001.1 288 GLEAVGRRLKAISEKFNIPVEFHG-VPVFAPDVTPDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRIVKSLS 365
                                     ************************.688899************************************************ PP

                            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                     Pkv ++veqe+++n+++Fl+rf+e+l+yy a+f+s++++lpr+s++ri+vE+++l+r+ivnv+aceg+er+erhe ++k
  FANhyb_rscf00005148.1.g00001.1 366 PKVTTLVEQESNTNTTPFLNRFIETLDYYLAMFESIDVTLPRNSKDRINVEQHCLARDIVNVIACEGKERVERHELFGK 444
                                     ******************************************************************************* PP

                            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                     W++rl++aGF+++pls+++++ +++llr ++ + y++ee++g+++lgWkdr+Lvs+SaW
  FANhyb_rscf00005148.1.g00001.1 445 WKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS-EHYKLEEKDGAMLLGWKDRNLVSASAW 502
                                     ***************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.09107484IPR005202Transcription factor GRAS
PfamPF035142.0E-131133502IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
SGVSHSSNSP FETNSYIPRL SLSPSVDCRR DSLQLSSSRA SLLQDACSPN IKHALQELES  60
ALMGPDEEEV TTTNIFGETS RRKGQRSLSW NQERQGAHVM QRQTSFVSGH RQSEKRHKVL  120
DEASPQGFPA DNLRKLLIAC AEALSDNNMD GFEKLIEKAR GAVSISGEPI QRLGAYMVEG  180
LVARKEASGS NIYRALRCRE PESDDLLSYM HILYEICPYL KFGYMAANGA IADACRNEDR  240
IHIIDFQIAQ GTQWVTLLQA LAARPSGAPH VRITGIDDPV SKYARGDGLE AVGRRLKAIS  300
EKFNIPVEFH GVPVFAPDVT PDMLDVRPGE ALAVNFPLQL HHTPDESVDV NNPRDGLLRI  360
VKSLSPKVTT LVEQESNTNT TPFLNRFIET LDYYLAMFES IDVTLPRNSK DRINVEQHCL  420
ARDIVNVIAC EGKERVERHE LFGKWKSRLT MAGFRQYPLS SYVNSVIRSL LRCYSEHYKL  480
EEKDGAMLLG WKDRNLVSAS AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6114050225377Protein SCARECROW
5b3h_D1e-6114050225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294325.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2P6QBM10.0A0A2P6QBM1_ROSCH; Putative transcription factor GRAS family
STRINGXP_004294325.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]