PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004862.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 294aa    MW: 33765.8 Da    PI: 5.5989
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004862.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92.1e-1257158147
                                     TSSS-HHHHHHHHHHHHHTTTT........................................................- CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........................................................t 23 
                                     rg+ T++E+ l+v+++k+lG++                                                         
  FANhyb_rscf00004862.1.g00001.1  57 RGNITEDEEVLIVRLHKLLGNRrhvamfdeiisknerirlaslklicqencygktpctalsgagwamklirafcfgpwI 135
                                     7999*************************************************************************** PP

                                     HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  24 WktIartmgkgRtlkqcksrwqky 47 
                                     W++Ia +++ gRt++++k++w+++
  FANhyb_rscf00004862.1.g00001.1 136 WSLIAGRIP-GRTDNEIKNYWNSF 158
                                     *********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3171155IPR017930Myb domain
SMARTSM007170.00151553IPR001005SANT/Myb domain
SuperFamilySSF466899.98E-151655IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-121858IPR009057Homeodomain-like
CDDcd001674.44E-41951No hitNo description
PROSITE profilePS500906.6252159IPR017877Myb-like domain
SMARTSM007174.4E-656161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-175975IPR009057Homeodomain-like
SuperFamilySSF466899.98E-15130160IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-17132163IPR009057Homeodomain-like
CDDcd001673.30E-4136159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRSSTYYDK HQGLKKGVWD PKEDQIVKDY VKKHGLKRCG KSVRLRWLNY LRPDIVRGNI  60
TEDEEVLIVR LHKLLGNRRH VAMFDEIISK NERIRLASLK LICQENCYGK TPCTALSGAG  120
WAMKLIRAFC FGPWIWSLIA GRIPGRTDNE IKNYWNSFVK RKLRPENPLE VPRNEKIRED  180
SPSSAAVAAA AEDSPHLTEN NVNEEEDDHH QYHDFDVGVG VAVESDAIND NGSGDDEHLR  240
DDLWWNNFMM DLNGTECNVS EFQTDFTEIW ESKENVIPVG DCSTDHHDIM PTNN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298561.11e-145PREDICTED: transcription factor MYB82-like
TrEMBLA0A2P6Q1H28e-83A0A2P6Q1H2_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004298561.11e-144(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3468822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-25myb domain protein 3