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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
FANhyb_rscf00004677.1.g00001.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family |
NAC |
Protein Properties |
Length: 355aa MW: 40161 Da PI: 7.7045 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
FANhyb_rscf00004677.1.g00001.1 | genome | kazusa | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 102.7 | 4.8e-32 | 9 | 82 | 55 | 129 |
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
FANhyb_rscf00004677.1.g00001.1 9 QNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-TYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 82
67*************************************9.8999****************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048829 | Biological Process | root cap development |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 355 aa
Download sequence Send
to blast |
RCRIGSTPQN EWYFFSHKDR KYPTGSRTNR ATNAGFWKAT GRDKCIRNTY KKIGMRKTLV 60 FYRGRAPHGQ KTDWIMHEYR LEDGDDPQGN LSSEDGWVIC RVFKKKNLFK VTGNNEGGSS 120 SMNSSDHHHH QQLTMNTNQL QARTFMHAHS SRSDNQYLLR QQAFELNRPH DHDQDQDQLP 180 PSLHYAHLNL QPPPQYSLFH SQALNIPTTN SHKTLAAYND YSALPSDSSP GHGMVKQLMT 240 NPRDCESTGS ESLRYQACEP GLEVNDSACE PNQQTMVNAG GRSSDDQGMS EWAMLDRLVT 300 SHLGNEDSTS KGGASPSARY DQDGSGSSTV NQINQQQQQQ QLSLRGEMDF WGYAK
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-32 | 9 | 107 | 70 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-32 | 9 | 107 | 70 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-32 | 9 | 107 | 70 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-32 | 9 | 107 | 70 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-32 | 9 | 107 | 73 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-32 | 9 | 107 | 73 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-32 | 9 | 107 | 73 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-32 | 9 | 107 | 73 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-32 | 9 | 107 | 73 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-32 | 9 | 107 | 73 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-32 | 9 | 107 | 73 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-32 | 9 | 107 | 73 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-32 | 9 | 107 | 70 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-32 | 9 | 107 | 70 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |