PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00004677.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 355aa MW: 40161 Da PI: 7.7045

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00004677.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.7	4.8e-32	9	82	55	129
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle FANhyb_rscf00004677.1.g00001.1 9 QNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-TYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 82 67***********************************9.8999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.69	1	105	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-37	8	105	IPR003441	NAC domain
Pfam	PF02365	1.7E-15	8	81	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
RCRIGSTPQN EWYFFSHKDR KYPTGSRTNR ATNAGFWKAT GRDKCIRNTY KKIGMRKTLV 60 FYRGRAPHGQ KTDWIMHEYR LEDGDDPQGN LSSEDGWVIC RVFKKKNLFK VTGNNEGGSS 120 SMNSSDHHHH QQLTMNTNQL QARTFMHAHS SRSDNQYLLR QQAFELNRPH DHDQDQDQLP 180 PSLHYAHLNL QPPPQYSLFH SQALNIPTTN SHKTLAAYND YSALPSDSSP GHGMVKQLMT 240 NPRDCESTGS ESLRYQACEP GLEVNDSACE PNQQTMVNAG GRSSDDQGMS EWAMLDRLVT 300 SHLGNEDSTS KGGASPSARY DQDGSGSSTV NQINQQQQQQ QLSLRGEMDF WGYAK

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

RCRIGSTPQN EWYFFSHKDR KYPTGSRTNR ATNAGFWKAT GRDKCIRNTY KKIGMRKTLV  60
FYRGRAPHGQ KTDWIMHEYR LEDGDDPQGN LSSEDGWVIC RVFKKKNLFK VTGNNEGGSS  120
SMNSSDHHHH QQLTMNTNQL QARTFMHAHS SRSDNQYLLR QQAFELNRPH DHDQDQDQLP  180
PSLHYAHLNL QPPPQYSLFH SQALNIPTTN SHKTLAAYND YSALPSDSSP GHGMVKQLMT  240
NPRDCESTGS ESLRYQACEP GLEVNDSACE PNQQTMVNAG GRSSDDQGMS EWAMLDRLVT  300
SHLGNEDSTS KGGASPSARY DQDGSGSSTV NQINQQQQQQ QLSLRGEMDF WGYAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	9	107	70	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	9	107	70	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	9	107	70	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	9	107	70	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	9	107	73	170	NAC domain-containing protein 19
3swm_B	2e-32	9	107	73	170	NAC domain-containing protein 19
3swm_C	2e-32	9	107	73	170	NAC domain-containing protein 19
3swm_D	2e-32	9	107	73	170	NAC domain-containing protein 19
3swp_A	2e-32	9	107	73	170	NAC domain-containing protein 19
3swp_B	2e-32	9	107	73	170	NAC domain-containing protein 19
3swp_C	2e-32	9	107	73	170	NAC domain-containing protein 19
3swp_D	2e-32	9	107	73	170	NAC domain-containing protein 19
4dul_A	2e-32	9	107	70	167	NAC domain-containing protein 19
4dul_B	2e-32	9	107	70	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292409.1	0.0	PREDICTED: protein BEARSKIN1
Swissprot	Q9SV87	1e-106	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2P6PKB9	0.0	A0A2P6PKB9_ROSCH; Putative transcription factor NAM family
STRING	XP_004292409.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8752	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	2e-98	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]