PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00004522.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 675aa MW: 76561.6 Da PI: 5.3017

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00004522.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	373.7	2.4e-114	299	673	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseel 78 ++lL++cA+av+s d+++a++ L+ +++++sp+gd +qRla+y++++L++rl+ s+ +lyk+ + + ++++ ++ l FANhyb_rscf00004522.1.g00001.1 299 QTLLTQCAQAVASFDKRNATEQLKLIRQHSSPYGDGTQRLAHYMANGLEERLTAavSSVSLYKQSVCFSRTNMSAADIL 377 689************************************************955566789999999999999* PP GRAS 79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..sk 155 +a++++ ++P+ k+s++ aN++I++ +e+++r+HiiDf+i +G QWp+L+qaL++Rp+gpp +RiTg++ p+sg + FANhyb_rscf00004522.1.g00001.1 378 KAYQTYITACPFKKMSNFYANRTIVKLAEKATRLHIIDFGILYGYQWPCLIQALSKRPGGPPIVRITGIEFPQSGfrPS 456 **********************************************************************9 PP GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234 e+leetg+rL+++++++ vpf++++ vak++e++++e+++++++E+++Vn++ +l++l+ +++ l+s+rd+vLkl++++ FANhyb_rscf00004522.1.g00001.1 457 ERLEETGRRLQNYCKRFSVPFQYTA-VAKNWETIQYEDIKIDRDEMTVVNCMDRLKNLP-DDAVLDSPRDTVLKLIRRI 533 *********************.8***************************9.77778888******* PP GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313 +P+v+++ + +n++ F +rf eal+++s+lfd++e++l re+++r E+e++gr++ nvvaceg++r er et++ FANhyb_rscf00004522.1.g00001.1 534 NPDVFIHGIVNGTYNAPFFDTRFREALYHFSSLFDMFEETLLREDQQRLLFEQEIFGRDLINVVACEGSMRLERPETYK 612 *************************************************************************** PP GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +W+ r ++aGFk++pl++++ k+++++++ + + + v+e+ ++++gWk+r + ++S+W+ FANhyb_rscf00004522.1.g00001.1 613 QWQIRNKRAGFKQLPLDQDILKKVRTMVKSEYHKDFVVDEDGRWVLQGWKGRIIQAISCWK 673 **************************99888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.043	272	653	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.2E-112	299	673	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MNNFMFDQSS IPSFPDHNPP DQFEANHELT NLSFSPANSY PYSDFSPSSS SGLSSEGVNS 60 PDDSNTILRF ISEMLMQEED LENKPCMLQD CLALRAAEKS LYDVLVQEDP SSTSQNLTST 120 YQNVGSPDDV SNHSSSSSHA ASNWVDSDFD CVQEVLDTVI PNPFVSNGKG GVTDLEGNSS 180 FPADARQLSS DVNFSPDKGE SESRNGSRSK KNRYREDGDY VDEERSYKQS AVYADEAEPE 240 EIFDQVLLCQ GDKSRSSPQL SELQDGNGKL QRNGKAKGSK AKKTGKKKPD DNKEMVDLQT 300 LLTQCAQAVA SFDKRNATEQ LKLIRQHSSP YGDGTQRLAH YMANGLEERL TAAVSSVSLY 360 KQSVCFSRTN MSAADILKAY QTYITACPFK KMSNFYANRT IVKLAEKATR LHIIDFGILY 420 GYQWPCLIQA LSKRPGGPPI VRITGIEFPQ SGFRPSERLE ETGRRLQNYC KRFSVPFQYT 480 AVAKNWETIQ YEDIKIDRDE MTVVNCMDRL KNLPDDAVLD SPRDTVLKLI RRINPDVFIH 540 GIVNGTYNAP FFDTRFREAL YHFSSLFDMF EETLLREDQQ RLLFEQEIFG RDLINVVACE 600 GSMRLERPET YKQWQIRNKR AGFKQLPLDQ DILKKVRTMV KSEYHKDFVV DEDGRWVLQG 660 WKGRIIQAIS CWKSA

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MNNFMFDQSS IPSFPDHNPP DQFEANHELT NLSFSPANSY PYSDFSPSSS SGLSSEGVNS  60
PDDSNTILRF ISEMLMQEED LENKPCMLQD CLALRAAEKS LYDVLVQEDP SSTSQNLTST  120
YQNVGSPDDV SNHSSSSSHA ASNWVDSDFD CVQEVLDTVI PNPFVSNGKG GVTDLEGNSS  180
FPADARQLSS DVNFSPDKGE SESRNGSRSK KNRYREDGDY VDEERSYKQS AVYADEAEPE  240
EIFDQVLLCQ GDKSRSSPQL SELQDGNGKL QRNGKAKGSK AKKTGKKKPD DNKEMVDLQT  300
LLTQCAQAVA SFDKRNATEQ LKLIRQHSSP YGDGTQRLAH YMANGLEERL TAAVSSVSLY  360
KQSVCFSRTN MSAADILKAY QTYITACPFK KMSNFYANRT IVKLAEKATR LHIIDFGILY  420
GYQWPCLIQA LSKRPGGPPI VRITGIEFPQ SGFRPSERLE ETGRRLQNYC KRFSVPFQYT  480
AVAKNWETIQ YEDIKIDRDE MTVVNCMDRL KNLPDDAVLD SPRDTVLKLI RRINPDVFIH  540
GIVNGTYNAP FFDTRFREAL YHFSSLFDMF EETLLREDQQ RLLFEQEIFG RDLINVVACE  600
GSMRLERPET YKQWQIRNKR AGFKQLPLDQ DILKKVRTMV KSEYHKDFVV DEDGRWVLQG  660
WKGRIIQAIS CWKSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-47	298	673	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461324.1	0.0	PREDICTED: scarecrow-like protein 11
TrEMBL	A0A2P6QJ11	0.0	A0A2P6QJ11_ROSCH; Putative transcription factor GRAS family
STRING	XP_004295970.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-174	GRAS family protein