PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004091.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24770.3 Da    PI: 9.8276
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004091.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.6e-221762449
                                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                     n+sn qvtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  FANhyb_rscf00004091.1.g00001.1 17 ANDSNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGRKVFSF 62
                                    699************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-31665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.394666IPR002100Transcription factor, MADS-box
CDDcd002652.84E-35783No hitNo description
SuperFamilySSF554551.44E-26783IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-18828IPR002100Transcription factor, MADS-box
PfamPF003194.6E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVRKSKGRQK VEMVKMANDS NLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGRKVF  60
SFGHPCVESV IERFLTRNPP HHQSSGTMQL IEAHRNANVR ELNTELTQVT NDLEVERKRG  120
EEINRVRKAS QGHCWWESPI EEMEQSQCQQ LRGSLDELKK AVTKQIDSLL IQFASNPNPF  180
FAAGSSGNPT LIPNMGFNGV PVMPPHPNPH AWNPAFGRFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-17793186Myocyte-specific enhancer factor 2A
3kov_B7e-17793186Myocyte-specific enhancer factor 2A
3kov_I7e-17793186Myocyte-specific enhancer factor 2A
3kov_J7e-17793186Myocyte-specific enhancer factor 2A
3p57_A7e-17793186Myocyte-specific enhancer factor 2A
3p57_B7e-17793186Myocyte-specific enhancer factor 2A
3p57_C7e-17793186Myocyte-specific enhancer factor 2A
3p57_D7e-17793186Myocyte-specific enhancer factor 2A
3p57_I7e-17793186Myocyte-specific enhancer factor 2A
3p57_J7e-17793186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292057.11e-151PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK28e-69AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2P6PJW81e-139A0A2P6PJW8_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004292057.11e-151(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-71AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]