PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_rscf00003916.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 414aa MW: 45733.2 Da PI: 6.7905

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003916.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.7	2.2e-53	22	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+++yL+ kv + + i+evd++++ePw+Lp +k ++kewyfFs rd+ky+tg r+nrat FANhyb_rscf00003916.1.g00001.1 22 LPPGFRFHPTDEELITFYLASKVYNGAFCG-VDIAEVDLNRCEPWELPDVAKMGDKEWYFFSLRDRKYPTGLRTNRATG 99 79***********************877.34***********888889********************* PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatgkdkev+s+ +g+l g+kktLvfykgrap+g+kt+Wvmheyrl FANhyb_rscf00003916.1.g00001.1 100 AGYWKATGKDKEVYSAsSGALLGMKKTLVFYKGRAPRGQKTKWVMHEYRL 149 **********9978889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-64	17	172	IPR003441	NAC domain
PROSITE profile	PS51005	59.351	22	172	IPR003441	NAC domain
Pfam	PF02365	7.8E-28	23	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MLGLMEEMSE LLGREEVNEQ GLPPGFRFHP TDEELITFYL ASKVYNGAFC GVDIAEVDLN 60 RCEPWELPDV AKMGDKEWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDK EVYSASSGAL 120 LGMKKTLVFY KGRAPRGQKT KWVMHEYRLD GDFSSYRHTC KDEWVICRIH NKSGEKKNPM 180 QAQGQGEGQQ SNFLQQVVEA ASASASSGTG CSLPPLLEFQ SQTTHQNPSF LQSPSLLRMQ 240 ENDLMKSRNQ LFQLPSSSSS SSSSSSSAAA LQSMLFKSFL FPHQDQAGTT GTGTGAPKRC 300 KAEATNLPDF QTPPLNVANF NYLMEKNHSH VQPNGQDSLL QYHHHPRSSL SFDDFHYYNG 360 VLGLSTSAAT ASVDAETALS SASIGGFNRA GFQTMLDPLI KLPAAESSWN LDIA

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MLGLMEEMSE LLGREEVNEQ GLPPGFRFHP TDEELITFYL ASKVYNGAFC GVDIAEVDLN  60
RCEPWELPDV AKMGDKEWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDK EVYSASSGAL  120
LGMKKTLVFY KGRAPRGQKT KWVMHEYRLD GDFSSYRHTC KDEWVICRIH NKSGEKKNPM  180
QAQGQGEGQQ SNFLQQVVEA ASASASSGTG CSLPPLLEFQ SQTTHQNPSF LQSPSLLRMQ  240
ENDLMKSRNQ LFQLPSSSSS SSSSSSSAAA LQSMLFKSFL FPHQDQAGTT GTGTGAPKRC  300
KAEATNLPDF QTPPLNVANF NYLMEKNHSH VQPNGQDSLL QYHHHPRSSL SFDDFHYYNG  360
VLGLSTSAAT ASVDAETALS SASIGGFNRA GFQTMLDPLI KLPAAESSWN LDIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-53	14	175	7	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301620.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 2
Swissprot	Q9S851	7e-99	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A2P6PBQ8	0.0	A0A2P6PBQ8_ROSCH; Putative transcription factor NAM family
STRING	XP_004301620.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7888	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	2e-96	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]