PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SBP

Protein Properties

Length: 688aa MW: 75870.7 Da PI: 7.6693

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_rscf00003915.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129	1.7e-40	238	315	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe h+k++++lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ FANhyb_rscf00003915.1.g00001.1 238 MCQVDDCKEDLSTAKDYHRRHKVCESHAKSTKALVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 315 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.4E-34	232	300	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.573	236	313	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.76E-37	237	317	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.1E-30	239	312	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
SSFWSSSSSS SSINSGSVTE EHEAVCWVLL CVELGESVRF GILIVGQICI ADWSLRGSDR 60 ETKQGSRIDW EFHVWVQLKI ILVSESWMEE VGAQVATPIF LRQSLSSRFC DPPAAMAKKK 120 RDLPYQAPNY QHPNSQPLFG NPGSNSWNPN VWDWDAVRFV ARPLDTEMMG ASNSEPRRKE 180 EAAGGAVKST AVAVEDEDER LQLNLGGGLA SVEEPAVSRP NKRVRSGSPG NNGGSYPMCQ 240 VDDCKEDLST AKDYHRRHKV CESHAKSTKA LVAKQMQRFC QQCSRFHPLS EFDEGKRSCR 300 RRLAGHNRRR RKTQPEDVTS RLTIPGDGDN KTSGNLDIVS LLAAITRPQG KTDVRNTNSS 360 SVLDREQLLQ ILSKINSLPL PVDLAAKLPN LGNLNWKASD LLPLDLQNKL NGKTSVSTLD 420 LITVLSATLA TPSDTLAILS QKSSQSSDSE KTKLTCSDQE RPNLQKRSPQ EFHSAGGERS 480 STSYQSPAED SDCQVQETRV KLPLQLFSSS PEDDSPPKLA SSRKYFSSDS SNRTEERSPS 540 SSPPVMQTLF PMKSLAETVK SEKRSISKES NLNLDYSLNG GSNLPFDLFR GSNRGAVSSS 600 IQNFPHQAGY TSSGSDHSPS SLNSDPQDRT GRILFKLFDK DPSQLPGTLR TQVYSWLSNS 660 PSEMESHIRP GCVVLSVYVS MPFAAWEH

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

SSFWSSSSSS SSINSGSVTE EHEAVCWVLL CVELGESVRF GILIVGQICI ADWSLRGSDR  60
ETKQGSRIDW EFHVWVQLKI ILVSESWMEE VGAQVATPIF LRQSLSSRFC DPPAAMAKKK  120
RDLPYQAPNY QHPNSQPLFG NPGSNSWNPN VWDWDAVRFV ARPLDTEMMG ASNSEPRRKE  180
EAAGGAVKST AVAVEDEDER LQLNLGGGLA SVEEPAVSRP NKRVRSGSPG NNGGSYPMCQ  240
VDDCKEDLST AKDYHRRHKV CESHAKSTKA LVAKQMQRFC QQCSRFHPLS EFDEGKRSCR  300
RRLAGHNRRR RKTQPEDVTS RLTIPGDGDN KTSGNLDIVS LLAAITRPQG KTDVRNTNSS  360
SVLDREQLLQ ILSKINSLPL PVDLAAKLPN LGNLNWKASD LLPLDLQNKL NGKTSVSTLD  420
LITVLSATLA TPSDTLAILS QKSSQSSDSE KTKLTCSDQE RPNLQKRSPQ EFHSAGGERS  480
STSYQSPAED SDCQVQETRV KLPLQLFSSS PEDDSPPKLA SSRKYFSSDS SNRTEERSPS  540
SSPPVMQTLF PMKSLAETVK SEKRSISKES NLNLDYSLNG GSNLPFDLFR GSNRGAVSSS  600
IQNFPHQAGY TSSGSDHSPS SLNSDPQDRT GRILFKLFDK DPSQLPGTLR TQVYSWLSNS  660
PSEMESHIRP GCVVLSVYVS MPFAAWEH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-31	227	312	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300082.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2P6PC02	0.0	A0A2P6PC02_ROSCH; Putative transcription factor SBP family
STRING	XP_004300082.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9694	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-168	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]