PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00003540.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 662aa    MW: 75186.9 Da    PI: 6.3608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00003540.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.42.1e-16580640259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                     dDg +W  YG K+  ++ +pr+Y+rC ++   gC++ k+++  +  pk++++tY g+H+++
  FANhyb_rscf00003540.1.g00001.1 580 DDGEAWIQYGDKKLLDAAYPRAYFRCIHQldqGCQAGKQIQIVQYTPKMFQTTYYGNHTCR 640
                                     8999************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520581.87E-316220IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.1E-3610314IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.72E-9201313IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.802.9E-17570640IPR003657WRKY domain
SuperFamilySSF1182902.09E-17572640IPR003657WRKY domain
PROSITE profilePS5081117.063574637IPR003657WRKY domain
SMARTSM007741.5E-18579641IPR003657WRKY domain
PfamPF031068.0E-16580640IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
FPGFSNTQPF KKLKFINLSH SHYLTKTPDF TEATNVETLV LEGCSSLLDV NSSISALRNL  60
VYLSLRGCKD LESLPSSICL KSLKTLDLSG CSSLVFFPEI SGIMEDLSEI YLNETAIEEL  120
PSSIERLQGL VVLHLRNCRS LVRLPDNICN LVHLKDLTLS GCLKLYHLPE NLGNLESLMC  180
LEVEGSGLRG LPVSILCLRR LKTLSCDGCK EMTMPFSSWS SSIEEYNRGY SCLLHLDLSD  240
SNLWELSDGI AHLSSLKTLR LCRTNLKSLS ATMNQLCRLT RLELEACRRL KSVPELPSSI  300
NYIDAHDCSS SETVAKPETR CSMNLCFTFS NCLRLVQTNL FREIVETHSL YQSYYQRPLS  360
FNMSLPGDVI PDWFNYRCRG FSVTVELPPC WFDNKFLGFA ICAVSDFKGS HNDASDLSLL  420
CHCCLKGNHG RYSFSFTLLD WGFTNERILE SNHMFLAYVQ WSEYRLIEEG KLVNERNYME  480
EQNLSITESK SHHDSCESLP VRRRGKEGAG VQLEESPALA VLPELETFSR REWPIPPEGD  540
RSPAGETKKR PGMKDQMAYS YYMRRLNSES WTVVSAELTD DGEAWIQYGD KKLLDAAYPR  600
AYFRCIHQLD QGCQAGKQIQ IVQYTPKMFQ TTYYGNHTCR DIVKDPQQIM GAFDPVSPSK  660
RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-16580640969OsWRKY45
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308990.10.0PREDICTED: TMV resistance protein N-like isoform X1
RefseqXP_011469999.10.0PREDICTED: TMV resistance protein N-like isoform X1
RefseqXP_011470000.10.0PREDICTED: TMV resistance protein N-like isoform X1
RefseqXP_011470001.10.0PREDICTED: TMV resistance protein N-like isoform X2
TrEMBLA0A2P6SLT30.0A0A2P6SLT3_ROSCH; Putative transcription factor WRKY family
STRINGXP_004308990.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2634323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.27e-34WRKY family protein