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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00003491.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 351aa MW: 39151.1 Da PI: 8.9351 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.4 | 1.4e-39 | 117 | 239 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 a+kkdrhski T++g RdRRvRls+++a++fFdLqd LGfdk+s t+eWLl ++k ai +l +++ +++ ++ ss s FANhyb_rscf00003491.1.g00001.1 117 AVKKDRHSKIFTAQGFRDRRVRLSLNVAREFFDLQDLLGFDKASTTLEWLLGKSKNAIRDLEKSKCKNSFSS---SSTS 192 78**************************************************************44433111...1111 PP TCP 81 sasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133 + + +++ k+ ++ k+aa +a++srakarararertrekm+ FANhyb_rscf00003491.1.g00001.1 193 E-----CDGVLEDNLdKRMRKMKEAA--AIMARSSRAKARARARERTREKMCRI 239 1.....11222223324455555555..88888******************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.7E-33 | 118 | 237 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.306 | 119 | 177 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.374 | 218 | 235 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MHSSTNNNIS CSGILYPFPP YNFPFSSSSS HNNHHPLLPQ ENTTPGGIFG LHQDQFSLVN 60 NSFLPPGPES TMLNLGGDSS NAIVPSPGDY QQHYGYDINN ISHPYFVSKD VQVPVVAVKK 120 DRHSKIFTAQ GFRDRRVRLS LNVAREFFDL QDLLGFDKAS TTLEWLLGKS KNAIRDLEKS 180 KCKNSFSSSS TSECDGVLED NLDKRMRKMK EAAAIMARSS RAKARARARE RTREKMCRIS 240 KRSPQICSHL RLFNELQPAD MNQEPGSTVL TEYHESVALK RKLKAPSGSN YPDRSLELNP 300 QRMEASSNCC SHINIQFPSV ISPNWDINGG VFTCPSICAI TANMNLNSSG F |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011467828.1 | 1e-170 | PREDICTED: transcription factor CYCLOIDEA | ||||
TrEMBL | A0A2P6SE01 | 1e-156 | A0A2P6SE01_ROSCH; Putative transcription factor TCP family | ||||
STRING | XP_004306027.1 | 1e-160 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 9e-26 | TCP family protein |