PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002764.1.g00003.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 196aa    MW: 23044.9 Da    PI: 4.9441
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002764.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM743.6e-2371453128
                             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyat 70 
                                     pG rF P ++el+++yL++kv+g +++ +e  i evd+y   +Pw++ k     k  a     +k++yfF++++kk+a+
  FANhyb_rscf00002764.1.g00003.1   7 PGQRFCPMEDELLMFYLQPKVNGLEVPGNEDlICEVDLYGDeDPWKIWKrfeatK--AndlrMNKDLYFFTQKKKKTAR 83 
                                     8************************8776555*******7658****75344431..2334345588************ PP

                             NAM  71 gkrknr.atksgyWkatgkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                                     ++r++r + + g+Wk + + +  l+   +  +      glkkt ++   ++ + ++ +W+m ey+l
  FANhyb_rscf00002764.1.g00003.1  84 SSRTSRtVGSGGTWKGQNRAEVYLVDenQ--KptstlLGLKKTYTYK--NEGSVHHGRWIMYEYEL 145
                                     ******4455889**99886655554340..245555********98..44555689*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-255167IPR003441NAC domain
PROSITE profilePS5100528.3475168IPR003441NAC domain
PfamPF023652.7E-177145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MESGDLPGQR FCPMEDELLM FYLQPKVNGL EVPGNEDLIC EVDLYGDEDP WKIWKRFEAT  60
KANDLRMNKD LYFFTQKKKK TARSSRTSRT VGSGGTWKGQ NRAEVYLVDE NQKPTSTLLG  120
LKKTYTYKNE GSVHHGRWIM YEYELDESQI LHEKVNKNEY VLCLLRKNDV LPEKKRKRQE  180
EDEMVEDYVV DDDGDN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462053.11e-140PREDICTED: uncharacterized protein LOC105350807
TrEMBLA0A2P6QGR31e-92A0A2P6QGR3_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-12NAC domain containing protein 28